38 datasets found

Water and sediment samples collected from coastal marine ecosystems across Indonesia to assess the biodiversity and structure of protist communities in the Indo-Pacific.

Read cloud sequencing and assembly of the human gut microbiome One marine sediment metagenome and one synthetic metagenome were included as validation and proof-of-concept of a...

In the present study, we investigate the identity and abundance of diazotrophs within sediments collected along distance gradients from inside to outside six cold seeps from two...

We generated metabarcoding data to characterise the microbiomes associated with stony coral mucus, soft coral mucus, macroalgae biofilm, sponge tissue, exudates, and aquarium...

The specific aim of this research was to characterize the temporal response of hyperarid soil AD microbial communities to an ex situ simulated rainfall event without nutrient...

A systematic analysis of the most commonly amplified 18S rRNA hypervariable regions and the effect that PCR/sequencing bias has on community representation. The V4 and V8-V9...

Raw sequencing reads of two marine sponges native to the U.K. (Hymeniacidon perlevis, Suberties massa) at two different time points

The factors shaping the composition and dynamics of microbiomes associated to aquatic organisms, especially regarding skin microbiomes have been understudied despite the...

Challenges of comparing marine microbiome community composition

from a manuscript in prep: "Viruses are thought to influence microbial community structure by density-dependent, host-specific infection, which can be strain-specific....

This study had the aims of (i) identifying the single-celled protist assemblages in the superficial sediments of Italian Mediterranean regional seas, (ii) relating their...

Overall, this study aims to achieve absolute quantification for live microbial cells in beach water. To achieve this, propidium monoazide (PMA) dye was used at the sample...

Marine diazotrophs play a key role in determining ecosystem productivity by alleviating nitrogen limitation. However, we know little about the identity and activity of...

Rain events increase Tijuana river flow to levels that the international water treatment plant in the Mexico-US border can not process. Therefore, rain runoff and sewage...

While the utility of environmental DNA (eDNA) metabarcoding surveys for biodiversity monitoring continues to be demonstrated, the spatial and temporal variability of eDNA, and...

These samples are from a time series experiment comparing different intervention treatments effectiveness at treating stony coral tissue loss disease (SCTLD). SCTLD-affected...

Corals are important model organisms for understanding invertebrate host-microbe interactions however, the lack of controlled experimental approaches for manipulating...

Six DNA extraction methods were tested in pure cultures of different nano and picoplankton species. The same extractions were checked in non-axenic mock communities formed...

LoopSeq sequencing data derived from amplicons of the full-length 16S rRNA in bacteria, the 18S-ITS region in fungi, and random amplified segments of baterial genomes.

Ticks are important vectors of a variety of pathogens. Recently, the viral and prokaryotic microbiomes in ticks have been explored using next-generation sequencing to understand...