Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"

Dataset

DOI

This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea. New Phytologist, https://doi.org/10.1111/nph.17153). The bioinformatic script was applied to raw sequences after paired-end sequences were joined using PEAR v0.9.10 (Zhang et al., 2014). Raw sequences are available at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551388. The metadata and ASV tables are provided so that the statistical analysis scripts can be applied without running the bioinformatic steps. Scripts used to fit HMSC models (Ovaskainen et al., 2017) are provided.

Identifier
DOI	https://doi.org/10.15454/0CNFWS
Related Identifier	https://doi.org/10.1111/nph.17153
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/0CNFWS

Provenance
Creator	Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne
Publisher	Recherche Data Gouv
Contributor	Vacher, Corinne
Publication Year	2020
Rights	etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess	true
Contact	Vacher, Corinne (INRAE)

Representation
Resource Type	Dataset
Format	application/gzip; application/x-rlang-transport; text/csv; application/octet-stream; text/tab-separated-values; application/vnd.openxmlformats-officedocument.wordprocessingml.document
Size	2436; 10541; 1627483; 28187; 6295; 10729; 3686; 23478; 13776; 17839; 150981; 16062; 28081; 1474; 70820; 73051; 651018; 7809; 7842
Version	3.1
Discipline	Agriculture, Forestry, Horticulture; Geosciences; Life Sciences; Plant Science; Biology; Omics; Microbial Ecology and Applied Microbiology; Silviculture; Ecology