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Plant Bioinformatics Facility (PlantBioinfoPF) data management plan
Data management plan of the Plant Bioinformatics Facility (PlantBioinfoPF), hosted at URGI. Copyrights: The creator(s) of this plan accept(s) that all or part of the text may be... -
An easy and robust method for isolation and validation of single nucleotide p...
This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome... -
Raw data - resistance Robijn - multiinfections
Experimental data on resistance to late blight in potato cv Robijn under multiinfections -
Data and code for the article "Bayesian inference for spatio-temporal stochas...
Data and codes for reproducing the MCMC inferences, tables and the main figures described in Kwame Adrakey et al. 2023. Bayesian inference for spatio-temporal stochastic... -
Replication Data for: Populations of the Beet Cyst Nematode Heterodera schach...
It is widely accepted that climate has an essential influence on the distribution of species and that temperature is the major abiotic factor that affects their life-history... -
Global statistics of the orthofinder analysis
General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc... -
Orthofinder results: raw and annotated orthogroups and list of unassigned pro...
Raw and annotated Orthofinder results on 61 nematode and 2 tardigrade (used as outgroup) species. The annotated list of species with description of the abbreviated names is... -
M. incognita protein-coding genes expression patterns
M. incognita protein-coding genes expression values across 4 life stages in triplicates. Life stages are as follows: - W: eggs - J2: pre-parasitic infective juveniles - J3:... -
Viral metagenomic and fungal ITS metabarcoding data from complex pools of pla...
Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from... -
Oak Genome Sequencing Website
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource... -
Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal...
This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the... -
Bioinformatic scripts used to analyze fungal metabarcoding data obtained from...
Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated... -
PPN-specific candidate effectors expressed in endophytic phases of M. incogni...
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit... -
Annotation data about Multi Criteria Assessment Methods used in the agri-food...
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers. -
Code for the article "An epi-evolutionary model to predict spore-producing pa...
MATLAB codes for reproducing the simulations and main figures described in Fabre et al. 2022. An epi-evolutionary model for predicting the adaptation of spore-producing... -
Horizontal gene transfer candidates in M. incognita
Analysis of horizontal gene transfer (HGT) candidates on the M. incognita predicted proteins from (Blanc-Mathieu et al. 2017), using Alienness (Rancurel et al. 2017) on a... -
OntoBiotope-BioNLP-OST
This version OntoBiotope-BioNLP-OST is a subset of the OntoBiotope ontology. created for the Bacteria Biotope task of BioNLP-OST 2019 competition. OntoBiotope is an ontology of... -
Confocal cleared L4 aphid head-stylets
Confocal cleared L4 aphid heads: Aphids were cleared/treated after "Smolla M, Ruchty M, Nagel M, Kleineidam CJ: Clearing pigmented insect cuticle to investigate small insects'... -
Genes differentially expressed across four life stages in M. incognita and GO...
Meloidogyne incognita protein-coding genes differentially expressed at four stages during the parasitic life cycle: - eggs - pre-parasitic second stage juvenile (J2) - mix of... -
Enriched gene ontology terms in upregulated genes at the transition from J2 t...
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the the pre-parasitic...