127 datasets found

Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They...

Organisée sous forme d'offre de services, l'infrastructure OLA met à la disposition des scientifiques des outils et moyens (bateaux, sondes, bassins/mésocosmes, laboratoires,...

Dataset overview This dataset provides: a non-redundant high-quality catalog of 8.4 million genes 853 Metagenomic Species Pangenomes (MSPs) This dataset can be used to...

Open and shared thesaurus covering INRAE's research fields. It serves as a repository within the institute to index and annotate documents, web pages, activity descriptions and...

Dataset overview This dataset provides: the updated Integrated Gene Catalog of the human gut microbiota (aka IGC2) 1,989 Metagenomic Species Pangenomes (MSPs) This dataset...

OntoBiotope is an ontology of microorganism habitats. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism...

In the context of the FeMAI project (Federated Microbiome AI for human health), this dataset was created to assess various machine learning classification methods for colorectal...

R code used to perform the network inference and analysis of "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls"

This .xlsx file gives the raw data used for the analyses of the paper entitled "Factors influencing the heterogeneity of benthic diatom communities inside natural alpine lakes"...

Metabarcoding of the 16S rRNA gene is commonly used to characterize microbial communities, by estimating the relative abundance of microbes. Here we present a method to retrieve...

Description des 3 fichiers csv : - list_morph.csv : Fichier csv donnant les listes floristiques diatomées obtenues en microscopie optique. - list_biomol.csv : Fichier csv...

Diatoms are a very diverse group of microalgae that encompass about 100 000 taxa. This makes an excellent bioindicator especially of rivers. The majority of biotic indices based...

This dataset concerns the study of the effect of three fermentation parameters (temperature, pH and harvest time) on the viability (cell counts) and acidification activity...

Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from...

This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the...

Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated...

Supplementary methods and tables of Annexe 2: Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and natural ecosystems

This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers.

MATLAB codes for reproducing the simulations and main figures described in Fabre et al. 2022. An epi-evolutionary model for predicting the adaptation of spore-producing...

Propionibacterium freudenreichii CIRM-BIA 129 and CIRM-BIA 1025 osmoadaptation in chemically defined medium (MMO) and osmoadaptation in the presence of glycine betaine (GB) were...