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FirmiData: Annotation of ICEs and IMEs in 40 Firmicutes genomes
Manually curated reference annotation of Integrative Conjugative Elements (ICEs) and Integrative and Mobilizable Elements (IMEs) and other degenerated ICEs and IMEs in 40... -
Genome assembly and annotation of Plasmopara muralis, the downy mildew pathog...
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus... -
Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcod...
Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using... -
Biochem-Env: a platform of biochemistry for research in environmental and agr...
Biochemical indicators are potent tools to assess ecosystem functioning under anthropic and global pressures. Nevertheless, additional work is needed to improve the methods used... -
Screening of phytophagous and xylophagous insects guts microbiota abilities t...
Raw Illumina MiSeq sequencing reads (paired) for Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor. Names used... -
Sporangia size and number relationship for Phytophthora infestans isolates
Phenotypic data (sporangia size and sporangia number) of P. infestans isolates obtained in three infection experiments conducted under controlled conditions. -
Inter-laboratory evaluation of the standard ISO 20130:2018 “Soil quality - Me...
This document presents the supporting information (i.e. the global tables of results) obtained during the Inter-laboratory evaluation of the standard ISO 20130:2018 “Soil... -
DNA metabarcoding of a mock community of 189 fungal strains associated to pla...
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified... -
Bioindication diatomées : comparaison microscopie / barcoding ADN. Pipeline M...
Le pipeline sélectionné pour produire les listes floristiques utilisées pour calculer les IBD des 447 échantillons est donné ci dessous Les données fastq sont disponibles au DOI... -
Measurements of net soil-atmosphere carbon dioxide exchange and its oxygen an...
Soils were sampled from 27 sites in western Eurasia during 2016 and 17 sites in northeastern Australia during 2017. Triplicate replicate microcosm incubations were created from... -
(Table 9.2.1) Abundance of microorganisms and rates of methane oxidation and ...
This dataset has no description
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(Table 9.1.2) Abundance of microorganisms and rates of methane oxidation and ...
This dataset has no description
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(Table 8.3.14) Rates of microbial processes in deposits covered by bacterial ...
This dataset has no description
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Thésaurus INRAE
Open and shared thesaurus covering INRAE's research fields. It serves as a repository within the institute to index and annotate documents, web pages, activity descriptions and... -
Plant Bioinformatics Facility (PlantBioinfoPF) data management plan
Data management plan of the Plant Bioinformatics Facility (PlantBioinfoPF), hosted at URGI. Copyrights: The creator(s) of this plan accept(s) that all or part of the text may be... -
Taxonomic profiles, functional profiles and manually curated metadata of huma...
In the context of the FeMAI project (Federated Microbiome AI for human health), this dataset was created to assess various machine learning classification methods for colorectal... -
An easy and robust method for isolation and validation of single nucleotide p...
This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome... -
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal ...
Dataset overview This dataset provides: the updated Integrated Gene Catalog of the human gut microbiota (aka IGC2) 1,989 Metagenomic Species Pangenomes (MSPs) This dataset... -
Diat.barcode, an open-access barcode library for diatoms
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They... -
Protective ability of oligosaccharides to preserve lactic acid bacteria (LAB)...
This study concerns the evaluation of the protective ability of oligosaccharides (FOS produced by enzymatic synthesis from sucrose) to preserve three lactic acid bacteria...
