Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library

DOI

Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library. The taxonomy has been determined by Diamond LCA algorithm via outformat 102. Two reports are available:

1- all the M. incognita proteins as queries

2- PPN-specific M. incognita proteins as queries

The first column represent the number of hist returning hits of the taxonomic entity under consideration. All the other columns represent the hierarchy of the taxonomic lineage.

Krona graphs providing a visual and interactive taxonomic distribution of the Diamond hits are also available for each report. (all proteins and PPN-specific only).

Identifier
DOI https://doi.org/10.15454/FROF42
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/FROF42
Provenance
Creator Danchin, Etienne; Rancurel, Corinne; Togawa, Roberto
Publisher Recherche Data Gouv
Contributor Danchin, Etienne
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Danchin, Etienne (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format text/tsv; text/html
Size 67218; 308401; 268572; 44244
Version 1.1
Discipline Geosciences; Life Sciences; Ecology; Plant Science; Biology; Omics