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MERCI effector-enriched motifs in the 100 first amino acids of M. incognita p...
MERCI effector-enriched motifs in the 100 first amino acids of M. incognita proteins M. incognita proteins with at least one of the 4 motifs identified as enriched in the known... -
Experimental validations of TE-impacted coding or regulatory loci
Contains experimental validations results. The sup_mat_2.pptx file summarize: i) Characteristics of the tested loci: position in the genome, inserted TE, the region... -
Bioinformatic scripts to assess the effect of the cropping system on both com...
These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm... -
Japanese plum small RNA sequencing
Deep sequencing of non-transgenic and eIFiso4G-silenced transgenic Japanese plum (Prunus salicina) small RNA libraries. Cultivar Angeleno. Files are in fastq format, compressed... -
Raw phenotypic data obtained on the Arabidopsis RILs with the Phenoscope robo...
This dataset gathers the main raw phenotypic data obtained and exploited in Marchadier, Hanemian, Tisné et al. (2019). It contains data from 4 RIL sets across 9 Phenoscope... -
Synthetic dataset used for validating srnadiff
This dataset contains all the mapped reads generated to validate the tool srnadiff on a synthetic dataset, where the "truth" is known. Samples 1 to 6 are supposed to be one... -
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as... -
Data supplementing the article “Exploring the capacity of aquatic biofilms to...
These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F.... -
Horizontal gene transfer candidates in M. incognita
Analysis of horizontal gene transfer (HGT) candidates on the M. incognita predicted proteins from (Blanc-Mathieu et al. 2017), using Alienness (Rancurel et al. 2017) on a... -
Données de réplication pour : PhytoDOM - Matériels Supplémentaires Rapport OF...
Matériels Supplémentaires associés au rapport OFB 2020 pour le projet PhytoDOM Mat.Supp.1 : Liste DOM Mat.Supp.2 : Liste PHYTOBS homogénéisée AlgaeBase Mat.Supp.3 : Liste... -
PPN-specific candidate effectors expressed in endophytic phases of M. incogni...
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit... -
Oak Genome Sequencing Website
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource... -
TWS enrichment sequencing data archive
Raw sequencing data associated with a paper. Enrichment of a termite-originated bacterial community in bioreactor under anareobic conditions, with wheat straw as sole carbon... -
M. incognita protein-coding genes expression patterns
M. incognita protein-coding genes expression values across 4 life stages in triplicates. Life stages are as follows: - W: eggs - J2: pre-parasitic infective juveniles - J3:...
