PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle

DOI

Annotated list of M. incognita candidate effector proteins that fulfil these criteria:

  • the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr.

  • the protein does not belong to a multigene family

  • the corresponding gene shows substantial and higher expression in endophytic phases

  • the protein is present in at least two other Meloidogyne species

The annotated table in XLSX format shows the following informations in columns: 1. Protein / Gene acessions number 2. Presence of at least one effector-enriched MERCI motif in the 100 first amino acids 3. Gene expression values across four different life stages 4. Comparison of average expression in endophytic vs. exophytic stages. 5. Orthogroup of origin and distribution in other PPN species.

A text version with tab-separated values is also available.

Identifier
DOI https://doi.org/10.15454/WBZZ5M
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/WBZZ5M
Provenance
Creator Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto
Publisher Recherche Data Gouv
Contributor Danchin, Etienne
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Danchin, Etienne (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format text/tab-separated-values; text/plain
Size 19824; 11404
Version 1.1
Discipline Geosciences; Life Sciences; Ecology; Plant Science; Biology; Omics