Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library

DOI

These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to Stoten journal.

The directory contains a curated macroinvertebrate reference library targeting a 461 bp fragment (including primers) of the mitochondrial cytochrome c oxidase subunit I gene (COI). The reference library contains 15,399 DNA sequences from 5 phyla, 11 classes, 19 orders, 526 families and 2974 macroinvertebrate genera.

“COI_04719_tax.tax”: text-based file containing the taxonomic affiliation of each nucleotide sequences from the reference library

“COI_04719seqs.fasta”: text-based file containing all the nucleotide sequences from the reference library

Identifier
DOI https://doi.org/10.15454/UNUFWY
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/UNUFWY
Provenance
Creator Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès
Publisher Recherche Data Gouv
Contributor Rimet, Frederic
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Rimet, Frederic (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format application/x-rar-compressed
Size 906136
Version 1.1
Discipline Agriculture, Forestry, Horticulture; Geosciences; Life Sciences; Ecology; General Genetics; Zoology; Microbial Ecology and Applied Microbiology; Biology; Omics; Hydrology and Hydrogeology