128 datasets found

La qualité écologique des milieux aquatiques est contrôlée avec une large palette d’outils normalisés. Parmi ces outils, il y a les bioindicateurs, tels que les microalgues et...

Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for...

Poultry are the main source of human infection by Salmonella. As infected poultry are asymptomatic, the identification of infected poultry farms is difficult. Controlling animal...

R-Syst network deals about systematic and (meta) barcoding and provide curated molecular databases for species identification and provide tools for diagnosis and inventories....

This dataset includes the gene annotation for the Illumina draft of the Plasmopara viticola genome. This genome draft has been published in Dussert et al. 2016...

Supplemental table S1 (Proportion of bacterial or fungal operational taxonomic units (OTUs) in the samples (%)) and supplemental figure S1 (Alpha-diversity indices of bacterial...

This archive provides the bioinformatic scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal...

Microbial activity measured using MicroResp in bulk and rhizospheric soil, at six altudinal levels along an elevation gradient at Massif de Belledonne, France

biom file

This dataset contains R-scripts to perform bioinformatic and statistical analysis on leaf-associated fungal communities of wild plant populations (Ma et al. Leaf-associated...

Botryosphaeriaceae are a diverse group of endophytic fungi colonizing the inner tissue of many woody species. As opportunist pathogens, they have been increasingly involved in...

Fusarium graminearum is one of the most frequent causal agent of the Fusarium Head Blight in the world, a cereal disease spread throughout the world, reducing grain production...

This dataset includes analysis files for the paper "Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola",...

Projet Diat ADN Transfert Transfert vers l’opérationnel de l’outil « diatomées ADN » pour le contrôle de la qualité des milieux aquatiques Livrable : Outils pédagogiques pour...

Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using...

This database is an adaptation for DADA2 of : Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA...

Biochemical indicators are potent tools to assess ecosystem functioning under anthropic and global pressures. Nevertheless, additional work is needed to improve the methods used...

VFA functionalization by the addition of hydroxylic group in the acidic chain would allow consecutive production of alternative biopolyesters else than microbial PHAs. In...

This pipeline performs a de-novo genome assembly, identifies single copy genes in the genome, and designs several pools of pair of primers for amplifying regions of these genes...

This dataset contains all genotypes files used in the manuscript for various genetic analyses.