An easy and robust method for isolation and validation of single nucleotide polymorphic markers from the Erysiphe alphitoides, the oak powdery mildew, draft genome

DOI

This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome sequencing used the SRR10956459 short reads (Bioproject: PRJNA593204). Assembly and Annotation of the draft genome can be obtained on https://arachne.pierroton.inrae.fr/AlphiGeno/data.html. Archives can contain README files with important information, ignore them at your own risk. If you have any question, request or commentary, you can email the dataverse contact.

FastQC, 0.10.0

CLC Genomics Workbench, 7.0.3

CD-HIT-est, 4.6.0

Augustus, 2.6.1

Primer3, 4.1.0

MassArray Designer, 4.0.20.2

Identifier
DOI https://doi.org/10.15454/UGMTBK
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/UGMTBK
Provenance
Creator Dutech, Cyril; Feau, Nicolas; Lesur, Isabelle; Ehrenmann, François; Letellier, Thomas; Li, Bayo; Mouden, Charlotte; Guichoux, Erwan; Desprez-Loustau, Marie-Laure; Gross, Andrin
Publisher Recherche Data Gouv
Contributor Dutech, Cyril
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Dutech, Cyril (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format text/plain; application/vnd.oasis.opendocument.spreadsheet; application/vnd.ms-excel; application/pdf; application/x-bzip; text/x-python; application/vnd.oasis.opendocument.text
Size 42643; 90622; 2696704; 690739; 1150165251; 86759; 7886; 71775; 32215; 4861391; 76792; 62820; 62029; 3732; 69576; 78289; 87406; 151699
Version 2.1
Discipline Agriculture, Forestry, Horticulture; Life Sciences; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Medicine; Silviculture; Microbial Ecology and Applied Microbiology; Plant Science; General Genetics
Spatial Coverage Plateforme Génome Transcriptome de Bordeaux (PGTB)