40 datasets found

Bacterial and fungal communities inhabiting the rhizosphere and root endosphere of banana plants in different developmental stages (mother and sucker plants) in two different...

Our study concerns the reliability of techniques for obtaining accurate and quantitative full-length 16S rRNA amplicon sequencing data on bacterial community structure with...

Background: We introduce AVIT Abundance and Variability In Taxonomy, an unbiased method to enrich for assigned members of microbial communities. As opposed to using a priori...

LoopSeq sequencing data derived from amplicons of the full-length 16S rRNA in bacteria, the 18S-ITS region in fungi, and random amplified segments of baterial genomes.

Ticks are important vectors of a variety of pathogens. Recently, the viral and prokaryotic microbiomes in ticks have been explored using next-generation sequencing to understand...

Benchmarking dsrAB amplicon generation and sequence processing and analysis

Amplicon sequencing of the 16S rRNA gene is the predominant method to quantify microbial compositions and to discover novel lineages. However, traditional short amplicons often...

16S and 18S rRNA amplicon data for seawater, sea ice, and experimental samples collected during the 2019-2020 MOSAiC expedition in the central Arctic Ocean

Surfaces of marine macrophytes (seagrasses and macroalgae) are inhabited by diverse microbial communities. Most studies focusing on epiphytic communities of macrophytes did not...

Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel

This project described a novel high throughput single bacteria sequencing method.

Community enrichment and isolation of bacterial strains for fucoidan degradation.</p><p>We sampled seawater and started an enrichment culture using articifial...

Raw sequencing reads of two marine sponges native to the U.K. (Hymeniacidon perlevis, Suberties massa) at two different time points

The factors shaping the composition and dynamics of microbiomes associated to aquatic organisms, especially regarding skin microbiomes have been understudied despite the...

Challenges of comparing marine microbiome community composition

This study had the aims of (i) identifying the single-celled protist assemblages in the superficial sediments of Italian Mediterranean regional seas, (ii) relating their...

Overall, this study aims to achieve absolute quantification for live microbial cells in beach water. To achieve this, propidium monoazide (PMA) dye was used at the sample...

While the utility of environmental DNA (eDNA) metabarcoding surveys for biodiversity monitoring continues to be demonstrated, the spatial and temporal variability of eDNA, and...

These samples are from a time series experiment comparing different intervention treatments effectiveness at treating stony coral tissue loss disease (SCTLD). SCTLD-affected...

Corals are important model organisms for understanding invertebrate host-microbe interactions however, the lack of controlled experimental approaches for manipulating...