Test dataset for assessment FROGS ITS methodology

DOI

Our objective was to create datasets allowing, among other things, to test methods and tools to process data from Fungi metabarcoding sequencing. Consequently, we have computer-generated reads of 250 nucleotides in length from artificial PCRs produced with the Grinder software on ITS1 or ITS2 from Fungi (UNITES v7.1), as diverse as possible. These data can be used for software benchmarking.

grinder, 0.5.4

Identifier
DOI https://doi.org/10.15454/AOT7UL
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/AOT7UL
Provenance
Creator Rué, Olivier ORCID logo
Publisher Recherche Data Gouv
Contributor Rué, Olivier; Pascal, Géraldine; Bernard, Maria
Publication Year 2021
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Rué, Olivier (INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement)
Representation
Resource Type Dataset
Format application/gzip
Size 208701440; 366868480; 210524160; 376074240
Version 1.1
Discipline Life Sciences; Basic Biological and Medical Research; Biology; Medicine; Omics
Spatial Coverage INRAE, UR 875 Unité de Mathématique et Informatique Appliquées, Genotoul Bioinfo, Auzeville, CS 52627, 31326 Castanet Tolosan cedex