20 datasets found

Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from...

Net catches of cephalopods were obtained during the cruises POS320/2 (March 2005), MSM49 (November/December 2015) and WH383 (March/April 2015) off Cabo Verde at a total of 18...

Compilation of environmental data for the 262 investigated localities, which include additional intra-lake localities taken within three large lakes namely: 16-KP-01-L02 (9...

Pelagic video transects with the Pelagic In-Situ Observation System (PELAGIOS, (Hoving et al., 2019a)) were conducted during the cruises MSM49 (Christiansen et al., 2016)...

Water sampling was carried out weekly between April and October 2016. Water samples were taken from two shallow sites (less than 5 km apart) in the Orkneys. Sampling was done...

We provide metabarcoding data (number of reads per operational taxonomic unit, OTU) determined from sediment samples collected on the sandy-beach water line of Ahrenshoop...

Onboard, cephalopods were identified morphologically to the lowest taxonomic level possible (species, genus or family), and whole specimens were preserved in formalin as...

Net catches of cephalopods were obtained during the cruises POS320/2 (March 2005), MSM49 (November/December 2015) and WH383 (March/April 2015) off Cabo Verde at a total of 18...

Environmental DNA (eDNA) metabarcoding of marine sediments has revealed large amounts of sequences assigned to planktonic taxa. How this planktonic eDNA is delivered on the...

This dataset contains 55 hdf5 files related to 10 samples (one per month) of benthic diatoms collected in Geneva lake at monthly interval in the same location (close to UMR...

This report gives informations about reference sequences used for the analysis of mock communities.

Fasq files, metadata, and communities datatables.

Results obtained from mock communities

Grinder (v.0.5.3) (Angly, et al., 2012) was used to simulate the PCR amplification of fulllength (V3V4 and V4) sequences from reference databases. We generated 25 sets of...

Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control).

Metabarcoding datasets describing the foliar mycobiome of grapevine (Vitis vinifera L.) leaves collected in the LEARN-BIOCONTROL project. Bioinformatic scripts used to analyze...

Our objective was to create datasets allowing, among other things, to test methods and tools to process data from Fungi metabarcoding sequencing. Consequently, we have...

Library Preparation strategy and detailed information of laboratory workflow used for the analysis of soil and insect bulk samples via metabarcoding

Small rodents are prevalent and functionally important across the world’s biomes, making their monitoring salient for ecosystem management, conservation, forestry and...

Arctic marine protist communities have been understudied due to challenging sampling conditions, in particular during winter and in deep waters. The aim of this study was to...