Replication data for : Impact of DNA extraction and sampling methods on bacterial communities monitored by 16S rDNA metabarcoding in cold-smoked salmon and processing plant surfaces

DOI

Information data on the diversity of bacterial communities present on 12 samples of cold smoked salmon, 18 samples of stainless steal coupons placed in a food processing environment and 115 samples of stainless steal and tri-polyurethane coupons placed in a food processing environment. The aim of this study was to evaluate DNA extraction and sampling methods biases on 16S metabarcoding studies. Sequencing data were generated by using Illumina MiSeq.

Identifier
DOI https://doi.org/10.15454/34LLGN
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/34LLGN
Provenance
Creator Maillet, Aurelien; Bouju-Albert, Agnès; Roblin, Steven; Vaissié, Pauline; Leuillet, Sébastien; Xavier, Dousset; Jaffrès, Emmanuel; Combrisson, Jérôme; Prévost, Hervé
Publisher Recherche Data Gouv
Contributor Prévost, Hervé
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Prévost, Hervé (UMR1014, Secalim, Oniris. Nantes, France)
Representation
Resource Type Dataset
Format text/tab-separated-values; application/x-tar
Size 162; 113857536; 4330; 492; 11903; 5664; 1971922432; 86134; 6656; 34267; 443; 11491; 471; 535643648; 20591; 1823
Version 1.0
Discipline Agriculture, Forestry, Horticulture; Life Sciences; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Basic Biological and Medical Research; Biology; Biospheric Sciences; Ecology; Geosciences; Medicine; Natural Sciences; Omics; Agricultural and Food Process Engineering; Microbial Ecology and Applied Microbiology