Sequencing data for genome assembly of fScoJap1 chub mackerel (Scomber japonicus)

The Pacific chub mackerel (Scomber japonicus) is a species of fish in the tuna and mackerel family, Scombridae. The chub mackerel has a well-developed swim bladder attached with the esophagus, which the "true mackerels" in the genus Scomber lack (from Wikipedia entry). This sample is from a male collected by JinGu Kim and Chul Lee in coastal waters off of South Korea, and coordinated by Chul Lee and Heebal Kim with funding from the Ministry of Ocean and Fisheries to generate a high-quality reference for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. This data was used for the assembly of fScoJap1, the first high-quality chromosome level genome of the chub mackerel.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0122549A74689D73E9603E58C28536FAB4F07B470AC
Metadata Access https://data.blue-cloud.org/api/collections/2549A74689D73E9603E58C28536FAB4F07B470AC
Provenance
Instrument HiSeq X Five; Sequel II; ILLUMINA; PACBIO_SMRT
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (128.398W, 34.771S, 128.398E, 34.771N)
Temporal Point 2019-07-08T00:00:00Z