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NOAA Genome Skimming of Marine animals inhabiting the US Exclusive Economic Zone
This project aims to create a multi-locus genetic barcode reference library for marine species of interest to NOAA's National Marine Fisheries Science Centers. Each sample is... -
Sardinops sagax, Scomber japonicus and Pleuronichthys verticalis Genome seque...
De novo hepatic transcriptome assembly and systems level analysis of three species of dietary fish, Sardinops sagax, Scomber japonicus and Pleuronichthys verticalis -
Testing the utility of alternative metrics of branch support to assess the an...
Targeted exon capture for pelagiarian fishes -
A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) ...
Raw read sequence data of UCE sequencing for analysis of Pelagiarian family relationships. -
Generating high quality reference genomes from field collected specimens by o...
Sample preservation challenges efforts to generate high-quality reference genomes or pangenomes for all 2 million+ plant and animal species. Here we compare the impacts of... -
Raw sequence reads from Danish species
Raw reads from samples of danish species, sequenced with the purpose of assembling mito genomes for future references. -
Pool-seq analysis for mackerels
In order to develop molecular sex identification tools for both chub and blue mackerels using sex-specific single-nucleotide variations (SNVs) identified by pool-sequencing... -
Transcriptomic analysis of short-term 17a-ethynylestradiol exposure in two Ca...
In this study, we carried out RNA sequencing (RNAseq) of liver RNA harvested from wild sardine and mackerel exposed under laboratory conditions to EE2 and developed an... -
Improving Metabarcoding Taxonomic Assignment: A Case Study of Fishes in a Lar...
Reference Barcodes for California Current Large Marine Ecosystem Fishes generated using the MiFish 12S Universal and Elasmobranch primer sets. Both vouchered and unvouchered... -
Metatranscriptomic Profile of Puffy Snout Syndrome in Scomber Japonicus
Puffy snout syndrome (PSS) is a chronic illness in captive-held scombrid fish. Here we evaluated the host physiological response to PSS and characterized the host-associated... -
Sequencing data for genome assembly of fScoJap1 chub mackerel (Scomber japoni...
The Pacific chub mackerel (Scomber japonicus) is a species of fish in the tuna and mackerel family, Scombridae. The chub mackerel has a well-developed swim bladder attached with... -
Trawlings during TITANIT cruise TIT1, Part III
The fish catches were carried out by the industrial midwater non-closed trawl. There was a small-mesh section with minimum mesh size of 6.5 mm in the trawl bag. Vertical opening...