MetaColi dataset

DOI

The Metacoli project aimed at understanding the metabolic response of a variety of E. Coli bacterial strains to different culture media. Here we provide the raw datasets of quantitative proteomics analysis and enzyme assays performed on five E. Coli strains grown on four different cuture media. We provide a set of R scripts for data analysis along with a detailed material ans method about the experiment and data analyses. We also provide a R script that analyses the relationships between enzyme abudance and enzyme activity. Those data clearly evidence a trade-off between abundance and activity.

R, 4.1.0

Identifier
DOI https://doi.org/10.15454/LOG7P4
Related Identifier https://doi.org/10.1111/1462-2920.12855
Related Identifier https://doi.org/10.1101/2021.05.04.442631
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/LOG7P4
Provenance
Creator Dillmann, Christine (ORCID: 0000-0002-9025-341X); De Vienne, Dominique ORCID logo
Publisher Recherche Data Gouv
Contributor Dillmann, Christine; De Vienne, Dominique; Entrepôt-Catalogue Recherche Data Gouv
Publication Year 2021
Funding Reference Agence Nationale de la Recherche ANR-08-SYSC-011
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Dillmann, Christine (INRAE); De Vienne, Dominique (INRAE)
Representation
Resource Type Dataset
Format text/x-r-source; text/markdown; text/tab-separated-values; application/pdf
Size 4359; 34916; 8170; 16384; 2865; 208646; 245664; 3096; 1900813; 4461; 3055
Version 2.0
Discipline Life Sciences; Medicine