Genetic and pharmacological evidence for kinetic competition between alternative poly(A) sites in yeast - 4tU cordycepin treatment

mPAT approach using an anchored oligo-dT (TV12VN) primer to determine changes to 3'UTR length in yeast upon cordycepin treatment and new transcription using 4-thiouracil (4tU) labelling of RNA. This appears as a T to C conversion in sequencing reads. Overall design: BY4741 yeast cells were grown at 30ºC until an OD600 of 0.6 was reached then 20µg/ml cordycepin and 500µM 4tU or equivalent volumes of DMSO added for 0, 20 or 40 minutes before harvesting. Samples were analysed via mPAT with an anchored oligo-dT primer using the Illumina MiSeq platform.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012032570D9D531226867AF15D067D3732D268B2328
Metadata Access https://data.blue-cloud.org/api/collections/032570D9D531226867AF15D067D3732D268B2328
Provenance
Instrument Illumina MiSeq; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor Biochemistry, Monash University
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2021-06-26T00:00:00Z