RNA-seq of CRISPR/Cas9-mediated genome editing zebrafishes the alligator pipefish spleen and the small white organ of the lined seahorse.

To explore the function of the gene in spleen development, we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene, we generated a point mutation zebrafish line by CRISPR/Cas9-mediated homologous recombination (HR). RNA-seq of these samples tissues (brain, liver, kidney, and intestine) were analyzed. In addition, to clarify the splenic phenotype of the Syngnathidaes, the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012CD5E370FB977CE76FDBD8ED66A7E9E03F78C03F2
Metadata Access https://data.blue-cloud.org/api/collections/CD5E370FB977CE76FDBD8ED66A7E9E03F78C03F2
Provenance
Instrument Illumina HiSeq 2500; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Coverage Begin 2022-11-10T00:00:00Z
Temporal Coverage End 2022-11-16T00:00:00Z