CT raw data, polyp-cavity segmentation and calices segmentation (all DICOM format) of Madrepora oculata colony sample GeoB12747-1

DOI

Madrepora oculata sample GeoB12747-1 originates from Meknes mud vulcano, Gulf of Cadiz, where it was taken with the Marum ROV CHEROKEE during Pelagia cruise 64PE284 (position: 34,9883°N, 7.072°W, 714 water depth). The coral colony fragment was scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stack has a resolution of 0.35 mm in x-direction and y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format.This dataset contains the CT raw data (GeoB12747-1_RawData), the polyp-cavity instance segmentation (GeoB12747-1_cavities) and calices segemntation (GeoB12747-1_calices; given as unique label values) of the polyp-cavity instance segmentation.

Identifier
DOI https://doi.pangaea.de/10.1594/PANGAEA.969565
Related Identifier IsPartOf https://doi.pangaea.de/10.1594/PANGAEA.969578
Related Identifier References https://doi.org/10.48550/ARXIV.2406.18236
Related Identifier IsDocumentedBy https://doi.pangaea.de/10.1594/PANGAEA.969550
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.969565
Provenance
Creator Titschack, Jürgen ORCID logo; Schmitt, Kira ORCID logo; Baum, Daniel ORCID logo; Wienberg, Claudia ORCID logo; Timann, Christian; Lemke, Arne-Jörn
Publisher PANGAEA
Publication Year 2024
Funding Reference German Research Foundation https://doi.org/10.13039/501100001659 Crossref Funder ID Ba5042/6-1; Ti706/6-1; project 490665120 https://gepris.dfg.de/gepris/projekt/490665120 CTcoral – CyberTaxonomische Klassifizierung und morphologische Charakterisierung von Kaltwasserkorallen
Rights Creative Commons Attribution 4.0 International; Data access is restricted (moratorium, sensitive data, license constraints); https://creativecommons.org/licenses/by/4.0/
OpenAccess false
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 6 data points
Discipline Earth System Research
Spatial Coverage (-7.073W, 34.981S, -7.072E, 34.988N); Meknes mud volcano
Temporal Coverage Begin 2008-03-01T11:30:00Z
Temporal Coverage End 2008-03-01T13:57:00Z