groundwater metagenome Targeted Locus (Loci)

We will use samples of ultramafic groundwaters collected in parallel on 0.1 and 0.2 µm filters from the Coast Range Ophiolite Microbiological Observatory (CROMO) site in northern California, USA and the Cabeço de Vide site to test the hypotheses that A) microbial populations <0.2 µm in size contribute to the natural microbial diversity of ultrabasic groundwaters, and B) a significant portion of the microbial diversity described using physical lysis methods is derived from recalcitrant bacterial endospores. We will compare the taxonomic compositions of community DNA extract by gentle (chemical) and rigorous (physical) lysis approaches. These studies will be conducted in concert with the quantification of spore abundances using differential centrifugation and light microscopy, and through analysis of glass fiber filters and determination of the spore protein dipicolinic acid.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0127915ED74C4C1E9DC1BA95A21ABA2E083C462F7B4
Metadata Access https://data.blue-cloud.org/api/collections/7915ED74C4C1E9DC1BA95A21ABA2E083C462F7B4
Provenance
Instrument Illumina MiSeq; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2015-10-10T00:00:00Z