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Umbelopsidales and Mucorales genomes
We sequenced the genomes of six Mucoromycotina fungi representing distant saprotrophic lineages within the subphylum (i.e. Umbelopsidales and Mucorales). We selected two... -
MetaPDOcheese 4: Whole genome of bacterial isolates from cheeses and milks
The genomic dataset consists of 373 bacterial strains spanning 3 phyla (172 Actinomycetota, 6 Bacillota and 195 Pseudomonadota), 17 genera and 47 species, isolated from French... -
New species description on genus Vibrio
The genus Vibrio is a large group of bacteria isolated from marine, brackish and human origins showing Gram-negative and sodium ion requirement for the growth. These bacteria... -
Data and analysis workflow for rind color heterogeneity and microbiota charac...
In this study, the color diversity of the PDO Munster was investigated with a special emphasis on heterogeneity and the link with biotic and abiotic factors. To do so, the... -
Data and analysis workflow for acidification and metabarcoding of serially fe...
The aim of the study was to investigate the dynamics of bacterial communities at the beginning of a backslopping process. We analysed the relationship between community... -
ESR10_Exp1_free amino acids composition
Free amino acid composition data -
ESR10_Exp1_pH
pH data -
ESR10_Exp1_water_soluble_metabolites
Water_soluble_metabolites (LC-MS untargeted metabolites) -
ESR10_Exp1_microorganisms_growth
Microorganisms growth data expressed as colony-forming units per g of cheese. -
ESR10_Exp1_Volatile_organic_compounds
GC-MS data -
Metabarcoding data MetaPDOcheese project
An exhaustive analysis was performed on more than 2,000 microbiota from 44 French Protected Designation of Origin (PDO) cheeses and associated milks. We characterized the... -
TANGO - Dataset 1 - Genomes, metatranscriptomics, targeted metabolomics and m...
This dataset comprises all results concerning biochemical quantification and sequencing data of semi-hard cheeses sampled throughout making and ripening. -
Replication data for: A selection process based on the robustness of anti-Lis...
In this study, the anti-L. monocytogenes EGDelux properties of a collection of 77 C. maltaromaticum strains were investigated by high throughput competition assays under varying... -
Volatile fatty acids
Volatile fatty acids data -
Proteolysis & Lipolysis
Proteolysis and lipolysis data -
Volatile organic compounds
GC-MS data -
Microorganisms growth
Microorganisms growth data expressed as colony-forming unit per g of cheese. -
Metatranscriptomics
Metatranscriptomics raw and normalised counts data -
Supplemental material - publication Irlinger and Monnet, 2021 - JDS
Supplemental table S1 (Proportion of bacterial or fungal operational taxonomic units (OTUs) in the samples (%)) and supplemental figure S1 (Alpha-diversity indices of bacterial...