25 datasets found

Sequencing data used in the manuscript including (1) The sequencing data of 16S, WMS and 2bRAD-M for MOCK (MOCK CAS and ATCC MOCK MSA 1002) and FFPE (only 2bRAD-M sequencing...

For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/campylobacter-jejuni.html This data is part of a pre-publication release....

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

Exemplary sequences of human outbreak strains from the Danish surveillance of foodborne bacterial pathogens e.g. Salmonella, STEC, Listeria

Ciprofloxacin-resistant Shigella sonnei has emerged as an important global health issue since the last decade. In this study we provide unprecedented insights into the local...

University of California at Davis 100K Pathogen Genome Project. Major bacterial pathogens in the United States and around the world, including Salmonella enterica, E. coli,...

Sequences associated with validation of sequencing reagents and platforms

Bacteria with public health implications due to virulence or antimicrobial resistance. Many of these bacteria were associated with outbreaks or have abnormal characteristics....

Draft and complete genome sequences of foodborne bacterial pathogens collected for research purposes at the FDA's Center for Food Safety and Applied Nutrition.

<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...

A survey across centres in Africa into the main bacterial causes of bloodstream infections. These data are part of a pre-publication release. For information on the proper use...

This study aims to detect pathogens in bronchoalveolar lavage fluid (BALF) from SCAP patients using both metagenomics extended-spectrum pathogenic microorganism sequencing...

Whole genome sequencing of bacteria in clinical samples, mainly from the A Coruna University Hospital Complex (CHUAC, Galicia, Spain) and associated collections, under project...

Shigella species Genome sequencing and assembly

Rectal carriage of mcr in pregnant women and neonates in three Nigerian state hospitals between 2015 and 2017.

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

This study aimed to evaluate the potential of Oxford Nanopore Technologies (ONT) GridION with R10.4.1 flow cells and associated library chemistry as a rapid and accurate method...