16 datasets found

In order to understand the mechanisms of Drought induced susceptibility (DIS) we’ve conducted a dual RNAseq experiment on rice infected tissues by Magnaporthe oryzae. At 4 days...

The rice blast fungus, Magnaporthe oryzae is a destructive pathogen of rice and other related crops, causing significant yield losses worldwide. Endogenous small RNAs (sRNAs),...

Circular RNAs (circRNAs), a novel class of endogenous RNAs, have been recognized to play important roles in physiology and diseases. However, the molecular mechanisms that...

This is a study of DNA methylation for rice cultivar (IR64).

In this BioProject, we sequenced 202 domesticated varieties from USDA rice minicore collection.

To investigate the underlying mechanisms that which genes involving in M. oryzae peroxisome dynamics in response to oxidative stress. Overall design: The transcriptome analysis...

Transcriptome map of Ciona nervous tissue undergoing regeneration

In order to understand the mechanisms of Nitrogen induced susceptibility (NIS) we’ve conducted a dual RNAseq experiment on rice infected tissues by Magnaporthe oryzae. At 0 day...

Eukaryotic cytosine methylation represses transposable elements, but also occurs in bodies of active genes. The extent to which these processes are conserved is unclear, and...

Chromatin accessibility and modification is a hallmark of regulatory DNA, which has led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin...

To investigate the potential effects of the sporophytic ovule tissues on the abortive mechanism in rice female gametophytes, we used RNA sequencing, combined with genetic...

Current methods for R-loop mapping need to perform DNA:RNA immunoprecipitation for each sample individually, with consequent limitations in throughput. Here, we develop and...

Detection of genetically modified organisms using highly multiplexed amplicon sequencing

Understanding the molecular mechanism and genomic regions associated with aerobic adaptation is of paramount importance to design improvement strategies especially for water...

The spatial and temporal regulation of transcription initiation is pivotal for controlling gene expression. Here, we introduce capped-small RNA-seq (csRNA-seq), which uses total...

This data set contains absolute counts of carbonised seeds of wild and cultivated plants and rice chaffs as well as floated litres of sediment per sample from the Middle Yayoi...