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Mycobacteria species Raw sequence reads
Identification of Mycobacteria species and detection of multi-drug resistant tuberculosis -
Bacterial WGS validation panel
The set represents a typical workflow in the public health microbiological laboratory: 10 Enterobacteriaceae isolates, 5 gram-positive cocci, 5 gram-negative non-fermenting... -
Mycobacterium tuberculosis Raw sequence reads
Rifampicin drug resistant Mycobacterium tuberculosis -
Mycobacterium tuberculosis (WGS)
whole genome sequencing data 2017-2021 -
Drakenstein12internal
This is a large scale project with the sequencing co-funded by collaborators at the University of Cape Town and WT Core (I2818). This is a project aimed at deepening our... -
Fatal Tuberculosis in a Free-Ranging African Elephant and One Health Implicat...
Tuberculosis (TB) in humans is a global public health concern and zoonotic TB is also receiving more attention as a potential human threat. However, discovery of animal cases of... -
Mycobacterium tuberculosis Raw sequence reads
This is a diagnostic procedure based on NGS combined with probe capture enrichment which covering the entire MTB genome using plasma from children with active TB. The goal of... -
RNA-Seq of modern Beijing and ancient Beijing strains
RNA-Seq of modern Beijing and ancient Beijing strains -
Evaluating Nanopore-based bacterial variant calling
Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground... -
Mycobacterium tuberculosis Raw sequence reads
The study compares whole genome sequencing with routine MT workflows for diagnosis of mycobacterium from positive liquid cultures in real-time. WGS prediction of mycobacterial... -
BactID
Bacterial identification run in house at UCLA -
RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bac...
Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in... -
phylogenetic study of Juglans
clarify the position of Juglans hopeiensis -
diagnosis of infectious peripheral pulmonary lesions by mNGS
We used mNGS to detect pathogens in matched transbronchial lung biopsy (TBLB), bronchoalveolar lavage fluid (BALF), and bronchial needle brushing (BB) specimens from 39 patients... -
NSPHL HAI WGS raw reads
Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab -
Whole genome sequence-based surveillance of Mycobacterium tuberculosis strain...
Whole genome sequencing data of Mycobacterium tuberculosis strains isolated in Portugal on behalf of the laboratory surveillance of the National Reference Laboratory for... -
CRISPR/NHEJ Raw sequence reads
NGS analysis of CRISPR-assisted non-homologous end-joining genome editing in Mycobacterium tuberculosis is specific -
NGS in HSCT
The fever of patients after allogeneic hematopoietic stem cell transplantation (allo-HSCT) is complex, and it is still challenging to identify the cause of the fever. The immune... -
Insights into Mycobacteriome Composition in Mycobacterium bovis-Infected Afri...
Using targeted long-read-based next-generation sequencing (tNGS) to investigate the mycobacterial composition in DNA extracted from Mycobacterium bovis infected... -
DNA extraction and Whole Genome Sequencing of mycobacteria from early positiv...
Public description: Technological advances over the past 20 years have led to the widespread use of molecular assays that aid the diagnosis of tuberculosis. The number of...