14 datasets found

XLSX file containing the number of reads per sample of every ASV inferred by the dada2 pipeline (R package) applied to the raw sequence files obtained by the Illumina NextSeq...

A CSV file describing the metadata from the Illumina NextSeq2000 meabarcoding library obtained with the COI primer pair (BF3 and BR2), including both field and control samples....

Processed reads of the COI Illumina NextSeq metabarcoding library. Processing was done using the R package dada2. The files contained include true samples, positive control and...

Demultiplexed raw reads of the COI Illumina NextSeq metabarcoding library. The files contained include true samples, positive control and negative controls to assess moth...

We combined the metabarcoding data of various coastal ecosystems and a newly developed trait-based approach to study the link between taxonomic and functional diversity across...

Four reference databases for each of the primer sets used in: Doble C. J, Hipperson H, Salzburger W, Horsburgh G, Mwita C, Murrell D. J and Day J. J. (Accepted) Testing the...

A CSV file describing the metadata from the Illumina MiSeq metabarcoding library obtained with the 12S-V5 primer pair to identify true samples, positive (fish and amphibian mock...

This is a CSV file with the filtered water volumes per sample (each sample represents a Sterivex capsule) and their eDNA yields after the extraction process with the QIAGEN...

FASTA file with the sequences for amphibian, fish and reptile species registered to occur in Mexico City, functioning as a custom reference database for the 12S-V5 metabarcoding...

FASTA file with the sequences for amphibian, fish and reptile species registered to occur in Mexico City, functioning as a custom reference database for the Meta16S...

Demultiplexed raw reads of the 12S-V5 Illumina MiSeq metabarcoding library using the 2 X 150 chemistry kit. The metabarcoding contains sequences of ~110 bp from various...

Demultiplexed raw reads of the Meta16S Illumina MiSeq metabarcoding library using the 2 X 250 chemistry kit. The metabarcoding contains sequences with a size range of 200 to 280...

A CSV file describing the metadata from the Illumina MiSeq metabarcoding library obtained with the Meta16S primer pair to identify true samples, positive (fish and amphibian...

A CSV file with the physical and chemical characteristics of Lake Xochimilco eDNA sampling sites. The file contains the values obtained for pH, temperature, dissolved oxygen,...