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Tinca tinca (tench), genomic and transcriptomic data
This project collects the genomic and transcriptomic data generated for Tinca tinca, common name tench, to facilitate genome assembly and annotation as part of the Darwin Tree... -
De Novo Transcriptome Assembly, Annotation and Comparison of Four Ecological ...
Transcriptome assemblies and annotations of four ecologically important Salmonid fishes: Coregonus lavaretus, Salvelinus alpinus, Salmo salar, Salmo trutta -
Functional investigation of MiR92b 3p for diagnosis and miRNA based cure in c...
The continued lack of knowledge concerning the molecular background of adverse effects caused by microcystin-LR (MC-LR) is surprising. This toxin requires additional attention,... -
whitefish species parallelism
Comparative transcriptomic across limnetic and benthic species-pairs within the Coregonus species complex -
Conservation status of whitefish populations (Coregonus spp.) in Denmark
We sequenced (ddRAD and whole genome) seven whitefish populations to estimate their demographic history including divergence time between European Lake whitefish and North Sea... -
Sequencing data (RADseq, RNAseq) of European whitefish from Lake Constance
The aim of this study was to identify the genomic and transcriptomic mechanisms underlying the rapid phenotypic diversification of European whitefish in Lake Constance following... -
2b-RAD sequences of european whitefish samples
The data is mainly used to investigate the evolutionary histories of a population of European whitefish (Coregonus lavaretus) species in a lake. Note that the adaptors and PCR... -
Whitefish_epigenetics
Whole genome bisulfite sequencing of whitefish species-pairs in order to identify shared contrasted print of DNA methylation between species in order to quantify the relative... -
Double-digest RAD Sequencing using Ion Proton semiconductor platform (ddRADse...
We have developed a new method for generating single nucleotide polymorphisms (SNPs) using next-generation sequencing. RAD Sequencing has become an established method for SNP... -
Rapid adaptation through genomic and epigenomic mechanisms following transloc...
In this study, we used the translocated populations of European whitefish in Scotland to understand the mechanisms behind rapid divergence and adaptation to new environments -
Population genomics of European whitefish in Britain
These data were used to reconstruct the evolutionary history of European whitefish populations in Britain. Using the seven native British populations and four more from... -
Genome-resolved metagenomics suggests a mutualistic relationship between Myco...
BackgroundSalmonids are important sources of protein for a large proportion of the human population. Interaction between the gut microbiota and host has in mammals been shown to... -
whole-genome re-sequencing of the Alpine whitefish radiation
This study aimed to understand the genetic basis of adaptation and speciation across the alpine whitefish radiation using whole-genome sequencing of Alpine whitefish from across... -
European whitefish whole genome sequencing
Short read whole genome sequencing for 32 Coregonus lavaretus to assess genetic divergence between benthic-limnetic species pairs -
Coregonus lavaretus Raw sequence reads
Molecular analyses show that challenging fish with microcystin-LR (MC-LR) causes perturbations of microRNA (miRNA) signaling. However, the significance and scope of these... -
Coregonus lavaretus Transcriptome
Transcriptome analysis of 12 European whitefish tissues -
Optimisation of Genotyping-by-Sequencing pipeline using Cattle and European w...
Diversifying animal cultivation demands efficient genotyping for enabling genomic selection, but non-model species lack efficient genotyping solutions. The aim of this study was... -
Coregonus lavaretus (common whitefish), genomic and transcriptomic data
This project collects the genomic and transcriptomic data generated for Coregonus lavaretus, common name common whitefish, to facilitate genome assembly and annotation as part...
