128 datasets found

We present a new de-novo whole-genome assembly obtained from a high quality DNA extraction and long-reads sequencing Nanopore technology obtained from an isolate sampled in the...

This dataset contains scripts and code that can be used to compare metabarcoding pipelines using a fungal mock community. These bioinformatics scripts were applied to the...

This version OntoBiotope-BioNLP-OST is a subset of the OntoBiotope ontology. created for the Bacteria Biotope task of BioNLP-OST 2019 competition. OntoBiotope is an ontology of...

Propionibacterium freudenreichii CIRM-BIA 129 and CIRM-BIA 1025 osmoadaptation in chemically defined medium (MMO) and osmoadaptation in the presence of glycine betaine (GB) were...

This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers.

MATLAB codes for reproducing the simulations and main figures described in Fabre et al. 2022. An epi-evolutionary model for predicting the adaptation of spore-producing...

Supplementary methods and tables of Annexe 2: Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and natural ecosystems

This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the...

A catalog of genes and species of the human oral microbiota

Description des 3 fichiers excels : DREAL 2016_2017 liste taxonomique microscopie_moleculaire.xlsx : Fichier excel donnant les listes floristiques diatomées des campagnes 2016...

Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated...

Diatoms are a very diverse group of microalgae that encompass about 100 000 taxa. This makes an excellent bioindicator especially of rivers. The majority of biotic indices based...

This dataset concerns the study of the effect of three fermentation parameters (temperature, pH and harvest time) on the viability (cell counts) and acidification activity...

Zip archive including : - files Data Fig1.xlsx ... Data Fig5.xlsx which contain data used for figures 1 to 5 of the paper - directory CytoFile which contains raw cytometric data...

Raw sequencing data associated with a paper. Enrichment of a termite-originated bacterial community in bioreactor under anareobic conditions, with wheat straw as sole carbon...

Description des 3 fichiers csv : - list_morph.csv : Fichier csv donnant les listes floristiques diatomées obtenues en microscopie optique. - list_biomol.csv : Fichier csv...

Metabarcoding of the 16S rRNA gene is commonly used to characterize microbial communities, by estimating the relative abundance of microbes. Here we present a method to retrieve...

This .xlsx file gives the raw data used for the analyses of the paper entitled "Factors influencing the heterogeneity of benthic diatom communities inside natural alpine lakes"...

R code used to perform the network inference and analysis of "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls"

Different Variant data set combining genotypic data data from the newly sequenced strains and data from available genomes sequences obtained at SGD. Data at vcf format or at...