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MINTIA paper Simulated data
90 sets of reads associated to the 45 simulated fosmids used in MINTIA paper (extraction of 15 sets of sequence from 3 genomes x 2 sequencing machines) -
Hatching-data_Gautier-et-al_FIM
Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control). -
Transposable element annotation of Botrytis cinerea B05.10
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the... -
Data supplementing the article “Aquatic biofilms as passive environmental DNA...
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera,... -
Distribution of 4654 cows milk proteins among different milk fractions
The “milk fractions” dataset informs on protein location in a specific or several milk fractions. -
A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on D...
Ready to use database adapted from Diat.barcode v9 for MOTHUR -
Dataset for the metabolic and physiological characterization of seeds from oi...
Faced with the challenges of adapting agriculture to climate change, seed production should have increased resilience to abiotic stress factors and the expected proliferation of... -
Extracellular vesicles produced by human and animal Staphylococcus aureus str...
The Extracellular Vesicle (EV) proteomes of five Staphylococcus aureus (S. aureus) strains originating from human, bovine, and ovine hosts were characterised thanks to... -
Adaptation of Lactobacillus Bulgaricus CIRM-BIA1592 to cow milk versus soymil...
Lactobacillus Bulgaricus (CIRM-BIA1592) adaptation to cow milk versus soymilk environments was studied thanks to proteomics. Bacteria were harvested at the begining of... -
Metagenomic analysis of virome cross-talk between cultivated Solanum lycopers...
We selected tomato (Solanum lycopersicum) and european black nightshade (Solanum nigrum) as a pair of related crop-weed species to study the diversity and potential flow of... -
Clustered IMG VR v3 file: IMGVR70
How this file was created? All proteins (n=66,585,678) were retrieved from IMG/VR v3 database (https://genome.jgi.doe.gov/portal/IMG_VR/IMG_VR.home.html) version... -
Supplementary tables to manuscript: “Metagenomic analysis of virome cross-tal...
Supplementary tables to manuscript in Chapter 4. -
Genotyping data in 4 related mapping populations of lucerne (Medicago sativa)
Four crosses between four individual parental plants (CA2, CA7, MA1,MA7) have been studied. Each individual parental plant has been crossed with two other parental plants. The... -
1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type
1D 1H-NMR metabolomic profiling of 15 DPA, 20 DPA, 25 DPA and Breaker fruit pericarp from the WT, gbp1-c4 and gbp1-c8 independent mutant lines of tomato. -
Impact of feeding strategies on young rabbit and its gut microbiota
You will find all the datasets presented in the study of Paës et al, "Establishment of hindgut bacterial ecosystems and acquisition of microbial functions in the infant rabbit:... -
Genotypic data and genetic map for Syrah x Grenache bi-parental grapevine pop...
This dataset, intended for QTL detection and genomic prediction, includes : 1) the SNP genotyping data, in vcf format, obtained by GBS in a grapevine bi-parental population, and... -
A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Dia...
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole,... -
Impact of oxidative stress (H2O2) on Pseudomonas Graminis - NMR dataset
Impact of atmospheric stresses on clouds microorganisms metabolism: the case of H2O2 : The dataset contains 32 files created from 500MHz NMR spectrometer and cdf files created... -
Environmental conditions modulate the protein content and immunomodulatory ac...
Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory... -
Genome assembly and annotation of Plasmopara muralis, the downy mildew pathog...
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus...