44 datasets found

Bacterial and fungal communities inhabiting the rhizosphere and root endosphere of banana plants in different developmental stages (mother and sucker plants) in two different...

This project aims to assess the viral diversity of cryptic viruses in onion samples from fields in Brazil. Genomic sequences were assembled and molecularly characterized and...

The goal of this study was to understand if/how development along coastlines impacts fish recruitment via impacts on olfactory cues associated with mangrove leaves. The response...

Mangrove 16S from Malaysia and Singapore -- Sonneratia alba and Avicennia alba -- from different plant components (leaf, fruit, pneumatophore, and sediment).

Environmental factors such as soil composition and microbiome have influence on the composition of the plant microbiome (Dastogeer et al., 2020). To isolate the effect of...

Communities are shaped by scale dependent processes. To study the diversity and variation of microbial communities across scales, the invasive and widespread seaweed Agarophyton...

The aim of the study was to estimatethe diversity, taxonomic composition, and core microbiome of the rhizosphere and endophyte microbial communities associated with Antarctic...

The seagrass holobiont, Halophila stipulacea, was studied using a multidisciplinary approach including morphology, biochemistry (pigment and phenol content) and epiphytic...

16SrRNA gene sequencing using universal bacterial V4 primers from Capraso et al 2008 on an Illumina MiSeq reading 2x250bp. ~40 male flies per sample were pooled and sequenced.

Contrasting diversity and succession patterns in leaf and root microbiome of two nearby temperate Zostera marina meadows

The goal of this study was to assess the effect of BCAs application on the soil microbiome diversity and structure, and on the Fusarium disease suppression

virome inside a collection of marine fungi

Microbiomes (16S/ITS) of endophythics and rhizosphere of Polygonum acuminatum and Aeschynomene fluminensis, and their relation to mercury

Metagenomic analysis of lignocellulosic biomasses

Environmental DNA collected from Medicinal Plants in AK, CO and PA to find factors affecting microbiome composition.

Metagenome analysis of PGI potatoes (tuber-sphere) cultivated in the island of Naxos and in Chalkidiki (Lakoma).

In an effort to characterize the global distribution of seagrass-associated microbial eukaryotes, we collected leaves, roots and sediment associated with twelve Zostera marina...

A comprehensive assessment of fungal communities in various habitats from Antarctica: diversity, distribution, and potential pathogens

In this study we attempted to produce fungal endophyte free wheat (Triticum aestivum) plants using several methods: treatment of seeds with fungicides, production of plants from...

The increased usage of long read sequencing has not been matched with publicly available databases suited for error-prone long reads when applied to metabarcodes. We address...