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Halophilic Communities as a Source for Novel Lignocellulolytic Enzymes
The goal of my project has been to identify microbes and enzymes tolerant of varying levels of salinity. The driving hypothesis for this work is that salt tolerance correlates... -
Spartina rhizoshpere and phyllospheric microorganisms
Clarify the potential invasion mechanism of Spartina -
ITS sequencing of the Panax notginseng-pine forest agroforestry system
Fungi of agroforestry systems and pure pine forest -
Tar patties are potential hotspots of hydrocarbon turnover and nitrogen fixat...
We sequenced metagenomes of communities associated with tar patties beached in February 2021 along the Israel shoreline, following a spill in the southeastern Mediterranean Sea. -
Fungal Communities in the four habitats of Arctic and Antarctic Sites
Fungi in polar regions -
Community composition and spatial diversity of epiphytic bacteria of the genu...
Community composition and spatial diversity of epiphytic bacteria of the genus Ulva at Nanao Island, China -
Earth Microbiome Project Multi-omics (EMP500)
The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial... -
Rps10: a new barcode for high throughput amplicon sequencing of Oomycete comm...
Oomycetes are a group of eukaryotes related to brown algae and diatoms, many of which cause disease in plants and animals. Improved methods are needed for rapid and accurate... -
Fungal communities in the Arctic
Fungal communities in the Arctic -
Biodegradation of isoprene in the terrestrial and marine environment
Although isoprene is emitted from the biosphere in amounts similar to methane, we know very little of its biodegradation. This project aims to investigate bacteria responsible... -
Seawater Environmental 16S Raw sequence reads
North Atlantic marine snow (oil associated) microbial sequences -
Influence of macrophyte and gut microbiota on mercury contamination in fish
The aim of this study was to determine the bioavailability of methylmercury (MeHg) produced by plants roots in aquatic ecosystems. Bacterial diversity was assessed by Miseq... -
Fungus in decay wood Targeted Locus (Loci)
Investigation of relationship between fungal diversity and wood decay rate. DNA were extracted from drill dust of decay-wood pieces placed in the Ailao Mountains National Nature... -
WH_metagenome
Water hyacinth metagenomic reads -
Linked machine learning models improve species classification of fungi when u...
The increased usage of long read sequencing has not been matched with publicly available databases suited for error-prone long reads when applied to metabarcodes. We address... -
Investigation of duckweed microbial communities
Investigation of duckweed microbial communities in natural and stress condition using V3V4 16S rRNA sequencing -
Hydroponic/ Aquaponic microbiome
Hydroponic Cropping Systems (HCS) including hydroponics and aquaponics are becoming increasingly popular as a solution to address global food security. Plants are grown... -
Bacterial diversity and community structure continuum analysis of rhizosphere...
We investigated the bacterial community structure of three different compartments such as rhizosphere, pneumatophore and bulk soils in marine sediments. -
Diversity of symbiotic cyanobacteria in cycad coralloid roots using a short-r...
Cycads are the only gymnosperms forming a symbiosis with nitrogen fixing cyanobacteria, inhabiting a specialized organ: the coralloid roots. Our research investigates the... -
Duckweed hosts a taxonomically reduced bacterial assemblage.
Culture-independent characterization of microbial communities associated with popular plant model systems have increased our understanding of the plant microbiome. However, the...