128 datasets found

This dataset contains scripts and code that can be used to compare metabarcoding pipelines using a fungal mock community. These bioinformatics scripts were applied to the...

Manually curated reference annotation of Integrative Conjugative Elements (ICEs) and Integrative and Mobilizable Elements (IMEs) and other degenerated ICEs and IMEs in 40...

Supplementary information containing figures, tables and tabulated data for "Milk metabolome reveals variations on enteric methane emissions from dairy cows fed a specific...

We present a new de-novo whole-genome assembly obtained from a high quality DNA extraction and long-reads sequencing Nanopore technology obtained from an isolate sampled in the...

Supplementary tables to manuscript in Chapter 3.

TBD

This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome...

Data provide detailed information on the diversity of bacterial communities present on 576 samples of raw pork or poultry sausages produced industrially in 2017. Bacterial...

http://grapevine-downy-mildew-genome.com/ is a web portal that provides public access to the reference genome of grapvine downy mildew (Plasmopara viticola, INRAE-PV221 strain)....

Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They...

Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control).

These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera,...

The Extracellular Vesicle (EV) proteomes of five Staphylococcus aureus (S. aureus) strains originating from human, bovine, and ovine hosts were characterised thanks to...

This dataset contains R-scripts to perform bioinformatic and statistical analysis on acorn associated fungal communities (Fort et al., Maternal effects and environmental...

Lactobacillus Bulgaricus (CIRM-BIA1592) adaptation to cow milk versus soymilk environments was studied thanks to proteomics. Bacteria were harvested at the begining of...

You will find all the datasets presented in the study of Paës et al, "Establishment of hindgut bacterial ecosystems and acquisition of microbial functions in the infant rabbit:...

This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole,...

Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory...

This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus...

This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar...