500 datasets found

The 5 vcf files contain structural variants detected with respectively Hifi (40X), CLR (42X), ONT (42X), Illumina (120X) and the haplotyped-resolved assembly of the heifer Th SV...

16S sequence fasta file of the colonic microbiota data and associated metadata of the study by Guerbette et al where mice were fed two different obesogenic diets and control diets.

This repository contains the viral OTU assembled from the viromes produced from human blood and fecal samples. 14 were healthy subjects and 15 were Crohn's disease patients. The...

Ce jeux de données regroupe l'ensemble des séquences de culture à partir du RPG public (source IGN) pour les périodes 2015-2021, 2015-2022 et 2015-2023. Le format est conçu pour...

These BED files contain methylation fractions and coverage depths for each CpG position and strand of the Sus scrofa genome that were performed with data produced by using...

Genotype dataset related to Jourdain et al. 2023

The dataset contains raw data associated to the publication " Integration of QTL and transcriptome approaches for the identification of genes involved in tomato response to N...

Reproducibility data for the AntiBody Sequence Database (ABSD) article. This dataset contains the raw data (antibody sequences) extracted on June 20, 2024, from various...

During the production of RNAi transgenic lines, we identified a gel-less mutant in the progeny of one T0 line out of nine (line L2). A S1 population of 114 plants segregating...

Plant defense responses involve several biological processes that allow plants to fight against pathogenic attacks. How these different processes are orchestrated within organs...

Fastq files contain Illumina pair end reads (2x150 nt). The first set deals with a synthetic mix of 5 phage genomes. Files have "Acc", "G" or "T7" prefixes. Acc stands for xGen...

IgA-coated microbial community from non-IBD, Crohn’s disease and ulcerative colitis patients analyzed by Illumina MiSeq 16S rRNA gene sequencing

Genetic variation data and data analysis scripts for the identification of signatures of adaptive divergence in Fagus sylvatica on Mont Ventoux, Southern France

Extraction of 16S-ITS-23S sequences: All GenBank and RefSeq genomes of Archaea and Bacteria from GTDB v214 [1] were downloaded using genome_updater v0.6.2. A total of 402,695...

The Phaeoexplorer project sequenced 60 genomes corresponding to 44 brown algal and sister species. This dataset corresponds to supplementary information relating to the initial...

In the context of the FeMAI project (Federated Microbiome AI for human health), this dataset was created to assess various machine learning classification methods for colorectal...

GeCKO provides four workflows (DataCleaning, ReadsMapping, VariantsCalling, and VcfFiltering), which allow one to easily chain the different analyses needed to transform raw...

These datasets include all the assemblies of the Charolais bovine genome that were performed with data produced by using different sequencing technologies, including Oxford...

The Sipha maydis genome project generated a highly contiguous genome assembly of the cereal aphid Sipha maydis, revealing 24,453 protein-coding genes, including enzymes involved...

Supplementary material for for the manuscript entitled Functional carbohydrate-active enzymes acquired by horizontal gene transfer from plants in the whitefly Bemisia tabaci by...