Data and scripts for "Resource landscape shapes the composition and stability of the human vaginal microbiota"

DOI

Supplementary scripts and data associated with "Resource landscape shapes the composition and stability of the human vaginal microbiota".

The data folder contains longitudinal follow-up data from women with vaginal microbiota information (OTUs inferred from 16S metabarcoding data) and metabolomics data.

The model folder contains the R scripts to perform numerical simulations of the community ecology model.

The R_workflow folder contains the scripts used to generate the figures of the article using the data and the numerical simulations outputs.

Identifier
DOI https://doi.org/10.57745/3GJF2Z
Related Identifier IsCitedBy https://doi.org/10.1101/2024.11.12.622464
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/3GJF2Z
Provenance
Creator ALIZON, Samuel ORCID logo; KAMIYA, Tsukushi ORCID logo; RAVEL, Jacques ORCID logo
Publisher Recherche Data Gouv
Contributor ALIZON, Samuel; KAMIYA, Tsukushi; RAVEL, Jacques; Centre national de la recherche scientifique; Institute for Genomics Sciences; Entrepôt-Catalogue Recherche Data Gouv
Publication Year 2024
Funding Reference Fondation pour la Recherche Médicale (FRM) SPF202005011951 ; ANRS-MIE ; NIH NR015495
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact ALIZON, Samuel (CIRB, CNRS, Collège de France, INSERM, Université PSL ; France); KAMIYA, Tsukushi (CIRB, CNRS, Collège de France, INSERM, Université PSL ; France)
Representation
Resource Type Dataset
Format type/x-r-syntax; text/tab-separated-values; application/octet-stream; text/markdown
Size 1316; 520; 5655; 18576; 10602; 1333; 1066; 5308; 2785; 439083; 2504417; 797; 1272; 6755
Version 1.0
Discipline Life Sciences; Biospheric Sciences; Ecology; Geosciences; Medicine; Natural Sciences