Abundances of transcripts, proteins, metabolites, and lipids in the cell cycle of budding yeast

For the first time in any system, we generated experiment-matched datasets of the levels of RNAs, proteins, metabolites, and lipids from un-arrested, growing, and synchronously dividing yeast cells. Overall design: We used centrifugal elutriation to obtain our synchronous cell cultures. From ~100 different elutriated cultures, we generated a cell size-series, spanning a range from 40 to 75 fL, sampled approximately every 5 fL intervals, in three biological replicates in each case. The same 24 distinct pools were aliquoted as needed to generate the input samples for measurements of RNA (with RNAseq), proteins (with LC MS/MS), and metabolites (GC-TOF MS for primary metabolites HILIC-QTOF MS/MS for biogenic amines and CSH-QTOF MS/MS for lipids). Here, we deposit the RNA datasets.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0127726491E24C01C8948C13523E85AC2CD569E31B8
Metadata Access https://data.blue-cloud.org/api/collections/7726491E24C01C8948C13523E85AC2CD569E31B8
Provenance
Instrument Illumina HiSeq 4000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2019-12-14T00:00:00Z