Data for: Substitute yeast extract while maintaining performance: showcase amorpha-4,11-diene production

DOI

The DaRUS repository contains the raw data corresponding to the figures of the manuscript "Substitute yeast extract while maintaining performance: showcase amorpha-4,11-diene production". Yeast extract (YE) is a complex nutritional source associated with high performance on microbial production processes. However, its inherent compositional variability challenges its scalability. While prior efforts have focused on growth-associated products, the dynamics of growth-uncoupled production, which leads to higher production rates and conversion yields, still need to be explored. This production scenario is common in large-scale applications. This study presents a systematic approach to replace YE for the production of the terpene amorpha-4,11-diene in Escherichia coli. Sequential processing was successfully applied to identify glutamic acid, alanine, leucine, valine, isoleucine, and glycine as the key amino acids (AAs) under slow growth conditions. Thoroughly applying biomass retention as part of sequential processing increased production capacity by 45% using these AAs instead of YE. Further studies, including flux balance analyses, targeted pyruvate as the common AA precursor. The optimized fed-batch process feeding pyruvate with 0.09 gPyr h-1 enhanced amorpha-4,11-diene production by 37 %, although adding only 1% carbon via pyruvate. Flux balance analysis revealed the criteria for optimum pyruvate feeding, e.g., to prevent succinate secretion and maintain the NADH/NAD+ balance. These findings illustrate the interplay between media composition and metabolic activity and provide a successful guideline for identifying lean, best-performing media for industrial applications.

Identifier
DOI https://doi.org/10.18419/darus-4552
Related Identifier IsCitedBy https://doi.org/10.1111/1751-7915.70056
Metadata Access https://darus.uni-stuttgart.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.18419/darus-4552
Provenance
Creator Castillo-Saldarriaga, Carlos Rafael ORCID logo; Takors, Ralf ORCID logo
Publisher DaRUS
Contributor Castillo-Saldarriaga, Carlos Rafael; Takors, Ralf
Publication Year 2024
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Castillo-Saldarriaga, Carlos Rafael (Universität Stuttgart); Takors, Ralf (Universität Stuttgart)
Representation
Resource Type Dataset
Format application/vnd.openxmlformats-officedocument.spreadsheetml.sheet; text/tab-separated-values; text/comma-separated-values; text/plain; application/vnd.ms-excel
Size 53015; 300; 288; 819; 309; 164; 1579; 1583; 1549; 1646; 206; 214; 80; 306; 1067; 1073; 861; 303; 447; 313; 90; 94; 156; 110; 50978; 706; 461824; 242618
Version 1.0
Discipline Biological Process Engineering; Construction Engineering and Architecture; Engineering; Engineering Sciences; Process Engineering, Technical Chemistry; Thermal Engineering/Process Engineering