Gene expression by the cold-water octocoral Dentomuricea aff. meteor during an ex-situ experiment testing the effects of mining-generated sediment plumes

DOI

We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Gene expression profiles in D. aff. meteor were used to evaluate the physiological pathways involved in the response to exposure to PMS and quartz particles. Coral fragments were collected from each treatment at times 0, 3, and 13 days and for the control and quartz treatments also at time 27 days. The study targeted genes involved in cellular stress and antioxidant reaction system (heat shock protein, superoxide dismutase, ferritin), cell structure/integrity (α-carbonic anhydrase, receptor-type protein tyrosine phosphatase) and immune responses (toll-like receptor, lysozyme, rel homology domain, ferritin).

Gene expression profiles in D. aff. meteor exposed to the different treatmentsHKG: House Keeping Genes (18S and β-actin)RHD: rel homology domain TLR: toll-like receptor HSP70: heat shock protein RP Tyr-PH: receptor-type protein tyrosine phosphatase SOD: superoxide dismutaseCarb Anhy: α-carbonic anhydraseCt = cycle threshold (nº of cycles in an RT-PCR required for the signal to exceed the background level)Relative gene expression of the gene = Relative quantity gene / Geometric mean of the relative quantities of each housekeeping gene (=RQ gene/Geomean RQ HKGs)Relative quantity (RQ) = (efficiency of the gene)^ΔCT

Identifier
DOI https://doi.org/10.1594/PANGAEA.948413
Related Identifier https://doi.org/10.1594/PANGAEA.948414
Related Identifier https://doi.org/10.3389/fmars.2022.915650
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.948413
Provenance
Creator Carreiro-Silva, Marina ORCID logo; Martins, Ines ORCID logo; Raimundo, Joana ORCID logo; Caetano, Miguel ORCID logo; Bettencourt, Raul ORCID logo; Cerqueira, Teresa (ORCID: 0000-0002-3397-574X); Colaço, Ana ORCID logo
Publisher PANGAEA
Publication Year 2022
Funding Reference Fundação para a Ciência e Tecnologia https://doi.org/10.13039/501100001871 Crossref Funder ID Mining2/0005/2017 Mining Impact 2; Horizon 2020 https://doi.org/10.13039/501100007601 Crossref Funder ID 678760 https://cordis.europa.eu/project/id/678760 A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Horizon 2020 https://doi.org/10.13039/501100007601 Crossref Funder ID 818123 https://doi.org/10.3030/818123 Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Seventh Framework Programme https://doi.org/10.13039/100011102 Crossref Funder ID 603418 https://cordis.europa.eu/project/id/603418 Managing Impacts of Deep-seA reSource exploitation
Rights Creative Commons Attribution 4.0 International; https://creativecommons.org/licenses/by/4.0/
OpenAccess true
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 2488 data points
Discipline Earth System Research
Spatial Coverage (-29.039 LON, 38.540 LAT); Condor Seamounts