Quantitative metabarcoding in large benthic foraminifera from reef sediment samples

Describing living community compositions is essential to answer basic ecological questions however, it is a challenging task on the morphological and molecular level. Quantitative metabarcoding has the potential to allow for more informative environmental monitoring, by rapidly producing outputs similar to specimen counting with higher taxonomic accuracy, in presence of a good reference database. It provides relative abundance that can be biased at a technical or biological level. We attempted to correct those biases and tested the accuracy of quantitative metabarcoding methods by assessing the large benthic foraminifera community composition using a recently developed mitochondrial marker (COI).

Identifier
Source https://data.blue-cloud.org/search-details?step=~012ABF2AC9975D979A5B7487B959F3B734C2E5DEBC8
Metadata Access https://data.blue-cloud.org/api/collections/ABF2AC9975D979A5B7487B959F3B734C2E5DEBC8
Provenance
Instrument Illumina NovaSeq 6000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (119.208W, -4.975S, 119.322E, -4.971N)
Temporal Point 2022-08-01T00:00:00Z