Replication Data for: Developing a culturomic approach to build a collection of grapevine foliar microorganisms with potential applications in disease biocontrol

DOI

This study aimed to develop and use a culturomic approach to build a collection of grapevine foliar microorganisms with potential applications for the biocontrol of grapevine foliar diseases, particularly downy mildew (caused by the oomycete Plasmopara viticola). A custom grapevine leaf-based culture medium (GLA) was developed and tested to enhance the cultivability of microbial communities associated with grapevine leaf surface (phyllosphere) and leaf endosphere. This plant-based medium was coupled with conventional diluted and undiluted laboratory media to isolate bacteria, yeast and filamentous fungi from grapevine leaves collected from vineyards in the Médoc region of Bordeaux in spring 2022. Isolates were identified by combining Matrix-Assisted Laser Desorption/Ionisation Time Of Flight Mass Spectroscopy (MALDI-TOF MS) and Sanger sequencing. The dataverse contains the input files and R scripts used for all statistical analyses carried out in the study.

Identifier
DOI https://doi.org/10.57745/PJD7Z3
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/PJD7Z3
Provenance
Creator Jaswa, Aarti ORCID logo; Vallance, Jessica ORCID logo; Fournier, Paola ORCID logo; Martin, Valerie (ORCID: 0000-0001-7329-516X); Masneuf-Pomarède, Isabelle ORCID logo; Labarthe, Simon ORCID logo; Martins, Guilherme ORCID logo; Vacher, Corinne ORCID logo
Publisher Recherche Data Gouv
Contributor Jaswa, Aarti; Vacher, Corinne; Entrepôt Recherche Data Gouv
Publication Year 2025
Funding Reference Agence nationale de la recherche ANR-20-PCPA-0010 ; Bordeaux Sciences Agro ; Fondation Bordeaux Université
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Jaswa, Aarti (INRAE, Université de Bordeaux, Bordeaux Sciences Agro, ISVV, SAVE, 33140 Villenave-d'Ornon, France); Vacher, Corinne (INRAE, Bordeaux Sciences Agro, ISVV, SAVE, Villenave-d’Ornon, France)
Representation
Resource Type Dataset
Format text/x-r-notebook; text/tab-separated-values; text/comma-separated-values; application/octet-stream; text/plain; application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
Size 9526; 6265; 20422; 27020; 5099; 3876; 2116; 2508; 1621; 2251; 2828; 670; 489; 7832; 1106289; 749155; 135404; 311956; 118484; 218322; 973; 205214; 62584; 41449414; 417337; 25638897
Version 1.0
Discipline Agriculture, Forestry, Horticulture