The dataset contains records of the main avian prey species of Bonelli’s Eagle (Aquila fasciata) and other large birds of prey: Red-legged Partridge (Alectoris rufa), Rock Pigeon (Columba livia) and Wood Pigeon (Columba palumbus) (Aves, Galliformes and Columbiformes), collected in the lower valley of River Sabor (NE Portugal), in the scope of the long-term Ecological Monitoring Program (PME) of the Baixo Sabor Hydroelectric Dams (AHBS), promoted by EDP – Energias de Portugal, S.A. This dataset includes results of point counts performed each season (winter, spring, summer and autumn), in the known territories of the Bonelli's Eagle in the lower Sabor river valley, from February 2010 to September 2014. Data consists of observations of individuals per sampling point.