RNA sequencing of fish from hydrogen-sulfide rich environments in Mexico, the Dominican Republic, and the United States

We sequenced mRNA from the gill tissue of 84 individual fishes across 9 poeciliid species found in both hydrogen sulfide-rich springs and non-sulfidic environments (7 non-sulfidic populations, 7 sulfidic populations, 6 individuals per population 10 samples were sequenced twice to achieve similar depth of coverage across all samples). We used this RNAseq approach to identify differentially expressed genes between the sulfidic and non-sulfidic populations of each species, as well as to characterize patterns of molecular evolution to identify genes that have experienced positive selection in sulfidic lineages.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012A1C02441A27062FBCB01796EDFC51ACB084F8887
Metadata Access https://data.blue-cloud.org/api/collections/A1C02441A27062FBCB01796EDFC51ACB084F8887
Provenance
Instrument Illumina HiSeq 2500; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2020-06-13T00:00:00Z