Replication data for A functional study of the conserved LSM proteins in C. elegans reveals their involvement in the stress response of metazoans [datasets]

DOI

Research data from the thesis “A functional study of the conserved LSM proteins in C. elegans reveals their involvement in the stress response of metazoans” by Eric Cornes http://hdl.handle.net/10803/315473

Table S1. RNAi phenotypes of lsm genes retrieved from wormmart./nWormmart is a tool available at wormbase [S1]. RNAi assays represented in this table were performed following diverse protocols and using distinct genetic backgrounds: /nRNAi by feeding starting at L4 [S2], RNAi by feeding starting at L1 [S3], RNAi in RNAi hypersensitive backgrounds [S4, S5], RNAi by injection [S6], or RNAi by soaking [S7]. Other RNAi screens referred here were focused in specific phenotypes as aging, cell proliferation, endocytosis, innate immunity or transgene silencing [S8–13]./n/nTable S2. Yeast lsm phenome./nTable shows all the yeast lsm phenotypes retrieved from the Saccharomyces Genome Database (SGD) [S13]. All the information available for S. cerevisiae mutant strains for lsm genes is shown. Non-viable phenotypes are highlighted in red. /n/nTable S3. RNA-Seq analyses of lsm-1 mutants. /nSheet 1: Statistical analyses including FPKM (fragments per kilobase of exon per million fragments mapped) for each gene mapped, and fold change between lsm-1 mutants and wild type animals. /nSheet 2: Genes significantly upregulated (p value ? 0.05). /nSheet 3: Genes significantly downregulated (p value ? 0.05). /nSheets 4 and 5: Additional information about genes up and down regulated in lsm-1 mutants. Gene description was retrieved from wormbase using the tool wormmart.

Identifier
DOI https://doi.org/10.34810/data404
Metadata Access https://dataverse.csuc.cat/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.34810/data404
Provenance
Creator Cornes Maragliano, Eric, 1987- ORCID logo
Publisher CORA.Repositori de Dades de Recerca
Publication Year 2023
Rights CC0 1.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/publicdomain/zero/1.0
OpenAccess true
Representation
Resource Type Genomic data; Dataset
Format application/vnd.openxmlformats-officedocument.wordprocessingml.document; text/plain; application/vnd.ms-excel; text/tab-separated-values
Size 18798; 19867; 1479; 76800; 63488; 3996856
Version 1.0
Discipline Life Sciences; Medicine