Transcripts containing Mjav telomeric repeats and their matches on the Mjav genome

DOI

We assembled the transcriptomes of M. javanica J2 life stage RNA-seq datasets using TRINITY. We searched for the presence of the motifs constituting the Mjav telomeric repeat on the assembled transcripts using blastn. We then selected the transcripts that contained at least one of the 3 Mjav telomeric motifs were mapped to the genome using GMAP.

Identifier
DOI https://doi.org/10.57745/YT15UV
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/YT15UV
Provenance
Creator Zotta Mota, Ana Paula; Danchin, Etienne; Robbe-Sermesant, Karine
Publisher Recherche Data Gouv
Contributor Zotta Mota, Ana Paula; Danchin, Etienne
Publication Year 2023
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Zotta Mota, Ana Paula (INRAE); Danchin, Etienne (INRAe)
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 28593; 20030
Version 2.0
Discipline Agriculture, Forestry, Horticulture; Geosciences