Species determination in plankton net (20 µm) concentrates by DNA sequencing during the PHYCOB cruise in the Southwestern Black Sea in 2021

DOI

At each station two vertical net tows were taken from the water column using a 20 μm plankton net (438-030, Hydro-Bios, Kiel, Germany) for analyses of plankton and phycotoxins. The depth of the hauls was fixed to 0 – 30 m. The collected net tow concentrates were adjusted to 1 L with filtered seawater. 150 mL aliquots were filtered under gentle vacuum (< 0.2 bar) through 1 μm pore-size polycarbonate filters (Whatman, USA) for DNA analysis. DNA from the filters was immediately extracted by using 5% Chelex buffer (Tanabe et al. 2016). For detection of eukaryotic species, universal primers for 18S rRNA gene V7-V9 variable region (18S-V7F: TGGAGYGATHTGTCTGGTTDATTCCG and 18S-V9R: TCACCTACGGAWACCTTGTTACG; modified from Tanabe et al. 2016) were used. The procedures and techniques, applicable to the treatment of the obtained sequences, selection and taxonomic identification of operational taxonomic units (OTUs), were administered according to the workflow described in Dzhembekova et al. (2017). Taxonomic assignment was performed using BLAST against a sequence database downloaded from GenBank.

Data provider:Nataliya SlabakovaNina DzhembekovaSnejana Moncheva

Identifier
DOI https://doi.org/10.1594/PANGAEA.964006
Related Identifier IsPartOf https://doi.org/10.1594/PANGAEA.963976
Related Identifier References https://doi.org/10.1016/j.hal.2017.07.004
Related Identifier References https://doi.org/10.1093/database/baaa062
Related Identifier References https://doi.org/10.1111/1755-0998.12459
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.964006
Provenance
Creator Dzhembekova, Nina ORCID logo; Krock, Bernd
Publisher PANGAEA
Publication Year 2024
Rights Creative Commons Attribution 4.0 International; Data access is restricted (moratorium, sensitive data, license constraints); https://creativecommons.org/licenses/by/4.0/
OpenAccess false
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 8272 data points
Discipline Earth System Research
Spatial Coverage (28.125W, 42.233S, 31.048E, 44.582N)
Temporal Coverage Begin 2021-09-12T04:20:00Z
Temporal Coverage End 2021-09-17T10:00:00Z