qPCR of Symbiodiniaceae in the large benthic foraminifera Sorites orbiculus

DOI

The uptake of novel Symbiodiniaceae strains in Sorites orbiculus was measured using qPCR. To facilitate novel algae uptake, the specimens were bleached for 27 days with 0.19 mmol L-1 menthol and 5 µmol L-1 DCMU, followed by 19 days of re-inoculation with the Symbiodinium microadriaticum (strains KB8 and CCMP2467) and Fugacium kawagutii (strain F2) individually and collectively at a concentration of 1e5 cells ml-1 and a further observation for 37 days to verify long-term establishment of symbiosis. The primer pairs S.S.ITS2F (5′- TTCTGCTGCTCTTGTTATCAGG− 3′) and S.S.ITS2R (5′- ACACACATGAGCTTTTGTTTCG− 3′) were used and qPCR measurements were performed before the start of the experiment, after the bleaching experiment and after the symbiosis stability evaluation.

Symbiodinium microadriaticum, strain CCMP2467: collected in the Gulf of Aquaba on 2004-07-30, symbiont isolated from Stylophora pistillataSymbiodinium microadriaticum, strain KB8: collected in Hawaii, symbiont isolated from Cassiopaia xamanchaFugacium kawagutii, strain F2: collected in Jamaica, Caribbean, symbiont isolated from Meandrina meandritesASW: artificial seawater

Identifier
DOI https://doi.pangaea.de/10.1594/PANGAEA.984044
Related Identifier IsPartOf https://doi.pangaea.de/10.1594/PANGAEA.984033
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.984044
Provenance
Creator Timme, Lukas Theodor; Henschen, Helena; Puerto Rueda, Diana N ORCID logo; Manda, Sneha; Parkinson, John Everett ORCID logo; Wild, Christian ORCID logo; Abramovich, Sigal ORCID logo; Morard, Raphael; Schmidt, Christiane ORCID logo
Publisher PANGAEA
Publication Year 2025
Funding Reference Deutsche Forschungsgemeinschaft, Bonn https://doi.org/10.13039/501100001659 Crossref Funder ID 444059848 https://gepris.dfg.de/gepris/projekt/444059848 SYMBIOAID: the role of diatom endosymbionts on the adaptive potenital of benthic foraminifera to climate change
Rights Creative Commons Attribution 4.0 International; Data access is restricted (moratorium, sensitive data, license constraints); https://creativecommons.org/licenses/by/4.0/
OpenAccess false
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 1332 data points
Discipline Life Sciences; Medicine; Medicine and Health; Physiology
Spatial Coverage (34.917 LON, 29.502 LAT); Gulf of Aqaba