Surfperches RAD sequence reads

The goal of this project is to present the most complete and well supported phylogenetic hypothesis for the family Embiotocidae (surfperches) based on hundreds of genomic markers. Surfperch are a family of viviparous marine fishes endemic to the North Pacific and serve as an attractive study system due to their unique life history traits. Previous work suggests embiotocid diversity is a product of adaptive radiation driven by ecological competition and niche partitioning. However, in order to fully understand the underpinnings of surfperches evolutionary history a robust phylogenetic hypothesis is necessary. With this data we reconstructed the family’s evolutionary history using maximum likelihood and Bayesian inference with supermatrices constructed from genome wide RAD seq data. Our results support a scenario where ancestral embiotocids first split between sandy and reef habitats during the middle Miocene after which each lineage underwent subsequent radiations and specializations.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012A56753A98B2BBB46F1F45617BFA52D17A1098A4A
Metadata Access https://data.blue-cloud.org/api/collections/A56753A98B2BBB46F1F45617BFA52D17A1098A4A
Provenance
Instrument Illumina HiSeq 2000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Coverage Begin 2015-04-03T00:00:00Z
Temporal Coverage End 2015-04-09T00:00:00Z