Supplementary tables for chapter 2 of manuscript: "Carrot populations in France and Spain host a complex virome rich in previously uncharacterized viruses"

DOI

Supplementary data of Chapter 2 of manuscript titled: "Carrot populations in France and Spain host a complex virome rich in previously uncharacterized viruses"

Table S1: information on sampled carrot populations in France and Spain Table S2: RT-PCR and RACE primer pairs targenting known and novel viruses in the carrot virome Table S3: Umbravirus RdRp gene and complete genome pairwise nucleotide identities Table S4: Solemoviridae RdRp pairwise amino acid identities Table S5: Geographical distribution of the various viruses identified in the carrot virome Table S6: Betaflexiviridae RdRp pairwise amino acid identities Table S7: Closteroviridae RdRp, CP and HSP70h pairwise amino acid identities Table S8: Endornaviridae complete genome pairwise nucleotide identities and RdRp pairwise amino acid identities Table S9: Spinareoviridae RdRp pairwise amino acid identities Table S10: Partitiviriade RdRp and CP pairwise amino acid identities Table S11: Amalgaviridae RdRp fusion protein pairwise amino acid identities Table S12: Totiviridae RdRp and CP genes pairwise amino acid identities Table S13: Benyviridae RdRp gene pairwise amino acid identities

Identifier
DOI https://doi.org/10.57745/HRBVNR
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/HRBVNR
Provenance
Creator Schönegger, Deborah; Marais, Armelle; Babalola, Bisola; Faure, Chantal; Lefebvre, Marie ORCID logo; Svanella-Dumas, Laurence; Brázdová, Sára; Candresse, Thierry ORCID logo
Publisher Recherche Data Gouv
Contributor Lefebvre, Marie; Candresse, Thierry; Entrepôt-Catalogue Recherche Data Gouv
Publication Year 2022
Funding Reference European Union’s Horizon 2020 Research and Innovation Programme 813542
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Lefebvre, Marie (INRAE); Candresse, Thierry (INRAE)
Representation
Resource Type Collection; Dataset
Format application/vnd.oasis.opendocument.spreadsheet
Size 41327; 28351; 33567; 24702; 26312; 18422; 29988; 27797; 19411; 30122; 28196; 29128; 28142
Version 1.0
Discipline Agriculture, Forestry, Horticulture; Computer Science; Geosciences; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Earth and Environmental Science; Environmental Research; Life Sciences; Natural Sciences