Transcriptomic response of lumpfish (Cyclopterus lumpus) head kidney to viral mimic, with a focus on the interferon regulatory factor family

To discover genes and mechanisms involved in the lumpfish antiviral response, fish (n=9 per group, i.e., for qPCR) were intraperitoneally injected with either the viral mimic polyinosinic polycytidylic acid [poly(I:C)] or phosphate buffered saline (PBS vehicle control), and head kidneys were sampled 24 hours post-injection (hpi) for transcriptomic analyses. Five samples from the PBS-injected and the other 5 from the poly(I:C)-were used in the RNA-Seq.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012692298200E1FB90EE94D49FD035EE16427836901
Metadata Access https://data.blue-cloud.org/api/collections/692298200E1FB90EE94D49FD035EE16427836901
Provenance
Instrument Illumina NovaSeq 6000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2025
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2018-10-01T00:00:00Z