Supporting Information Data for the Publication "Predicting Ligand Binding Modes by Scaffold-Guided Structure Refinement"

DOI

This dataset is part of the supporting information for the publication "Predicting Ligand Binding Modes by Scaffold-Guided Structure Refinement" by Pletzer-Zelgert et.al.

It contains a directory for each of the three protein targets discussed in the publication FABP4, ADCY10 and PDE10. These directories will contain the following files: • Initial models used as input (One for FABP4 and ADCY10, Five for PDE10). • One file containing all series ligands in the SDF format. • One txt file containing ligand names, ligand SMILES and measured activities. • One csv file containing all information from the evaluation. • One subdirectory containing the successfully identified model as a pdb file containing the protein, an SD file containing the docked ligand poses, as well as one Mol2 file containing the representative scaffold for the cluster.

Identifier
DOI https://doi.org/10.25592/uhhfdm.18237
Related Identifier IsPartOf https://doi.org/10.25592/uhhfdm.18236
Metadata Access https://www.fdr.uni-hamburg.de/oai2d?verb=GetRecord&metadataPrefix=oai_datacite&identifier=oai:fdr.uni-hamburg.de:18237
Provenance
Creator Pletzer-Zelgert, Jonathan ORCID logo; Kuhn, Bernd (ORCID: 0000-0002-4301-562X); Rarey, Matthias ORCID logo
Publisher Universität Hamburg
Publication Year 2026
Rights Creative Commons Attribution 4.0 International; Open Access; https://creativecommons.org/licenses/by/4.0/legalcode; info:eu-repo/semantics/openAccess
OpenAccess true
Representation
Language English
Resource Type Dataset
Version 1.0.0
Discipline Other