Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.

DOI

Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv. PN40024), (ii) the manually curated segregation files and (iii) and the final 12X.v2 chromosome assembly at the EMBL recommended format. The data set is provided in support of the data paper: “A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (V3)” by Canaguier A, Grimplet J, Di Gaspero G, Scalabrin S, Duchêne E, Mohellibi N, Guichard C, Choisne N, Rombault S, Le Clainche I, Bérard A, Chauveau A, Bounon R, Ruztenholtz C, Le Paslier M-C, Brunel D, Adam-Blondon A-F (Genomic Data, 2017, https://doi.org/10.1016/j.gdata.2017.09.002)

size:2.68 Mb

Identifier
DOI https://doi.org/10.15454/1.4962347083032307E12
Related Identifier https://doi.org/10.1016/j.gdata.2017.09.002
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/1.4962347083032307E12
Provenance
Creator Canaguier, Aurélie; Le Paslier, Marie-Christine ORCID logo; Duchêne, Eric; Scalabrin, Simone ORCID logo; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi ORCID logo; Adam-Blondon, Anne-Françoise ORCID logo
Publisher Recherche Data Gouv
Contributor admin; Mohellibi Nacer; INRA
Publication Year 2018
Rights info:eu-repo/semantics/openAccess
OpenAccess true
Contact admin (www.inra.fr)
Representation
Resource Type Dataset
Version 3.2
Discipline Agriculture, Forestry, Horticulture; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Life Sciences; Plant Science