Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.

Dataset

DOI

Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv. PN40024), (ii) the manually curated segregation files and (iii) and the final 12X.v2 chromosome assembly at the EMBL recommended format. The data set is provided in support of the data paper: “A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (V3)” by Canaguier A, Grimplet J, Di Gaspero G, Scalabrin S, Duchêne E, Mohellibi N, Guichard C, Choisne N, Rombault S, Le Clainche I, Bérard A, Chauveau A, Bounon R, Ruztenholtz C, Le Paslier M-C, Brunel D, Adam-Blondon A-F (Genomic Data, 2017, https://doi.org/10.1016/j.gdata.2017.09.002)

size:2.68 Mb

Identifier
DOI	https://doi.org/10.15454/1.4962347083032307E12
Related Identifier	IsCitedBy https://doi.org/10.1016/j.gdata.2017.09.002
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/1.4962347083032307E12

Provenance
Creator	Canaguier, Aurélie; Le Paslier, Marie-Christine ; Duchêne, Eric; Scalabrin, Simone ; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi ; Adam-Blondon, Anne-Françoise
Publisher	Recherche Data Gouv
Contributor	Adam-Blondon, Anne-Francoise; Mohellibi Nacer; INRA
Publication Year	2018
Rights	info:eu-repo/semantics/openAccess
OpenAccess	true
Contact	Adam-Blondon, Anne-Francoise (INRAE)

Representation
Resource Type	Dataset
Version	3.3
Discipline	Agriculture, Forestry, Horticulture; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Life Sciences; Plant Science