27 datasets found

Pseudo-nitzschia spp. produces a neurotoxin, domoic acid (DA), which can cause illness in humans, commonly known as amnesic shellfish poisoning, mass-mortality of marine...

This data contains genome sequences of single cells including model bacterial cells and environmental bacteria. Single cells were amplified by MDA. We have developed a new MDA...

Comparison of nifH primer performance for amplifying diazotrophs from the environment and establishing an analysis pipeline

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

In this study, we analyzed kuruma shimp hemocytes at single cell resolution using Drop-seq. This BioProject archived mRNA direct sequencing result of kuruma shrimp hemocytes...

RNA-Seq was conducted on liquid cultures (potato dextrose agar). The co-culture with the two strains was compared with the single cultures (controls).

Samples of two parasites were collected throughout their complex life cycles, the nematode Camallanus lacustris and the cestode Schistocephalus solidus. RNA was extracted from 7...

We gathered multi-species, coding sequence polymorphism data in five distant groups of animals via exon capture (butterflies, ants, earth worms, ribbon worms, mussels). We...

Environmental DNA (eDNA-seq) metabarcoding is a relatively new monitoring tool featuring in an increasing number of applications such as the facilitation of the accurate and...

RNA-seq datasets for the quagga mussel Dreissena rostriformis.

Mitochondria DNA enriched samples of single species of nematodes a hand assembled set of mock communities of nematodes previously morphologically and molecularly confirmed in...

The mono-culture and co-culture of Lactobacillus plantarum and Saccharomyces cerevisiae were applied to RNA-seq.

mRNASeq of Saccharomyces cerevisiae in response to pairwise co-culture (with Lachancea thermotolerans or Torulaspora delbrueckii) and tri-species culture (with Lachancea...

The present study evaluates the interactions between Philasterides dicentrarchi, a ciliate parasite that causes high mortalities in cultured flatfish, and turbot (Scophthalmus...

With a large number of genetically modified organisms (GMOs) entering the food and feed markets, it is now urgent to develop effective and efficient GMO detection methods. We...

In addition to sharing with condensin an ability to organize DNA into chromatids, cohesin regulates enhancer-promoter interactions and confers sister chromatid cohesion....

The repeated emergence of coffee wilt disease caused by Fusarium fungi over the past century severely impacted coffee production across sub-Saharan Africa. To improve disease...

Cell-free expression systems enable rapid prototyping of genetic programs in vitro. However, current throughput of cell-free measurements is often limited by the use of...

I thought that it is possible to directly measure the number of individuals by determining the number of haplotypes in the region of fast evolution speed as a method to more...

We have developed a new method for generating single nucleotide polymorphisms (SNPs) using next-generation sequencing. RAD Sequencing has become an established method for SNP...